Annotation Detail for SLC27A4
Basic Information Top
| Gene Symbol: | SLC27A4 ( ACSVL4,FATP4,IPS ) |
|---|---|
| Gene Full Name: | solute carrier family 27 (fatty acid transporter), member 4 |
| Band: | 9q34.11 |
| Quick Links | Entrez ID:10999; OMIM: 604194; Uniprot ID:S27A4_HUMAN; ENSEMBL ID: ENSG00000167114; HGNC ID: 10998 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.656699
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 7 / 564012 | 12 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 55 / 1939121 | 28 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 4 / 34366 | 116 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 9 / 119369 | 75 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 9 / 136302 | 66 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 77 / 3360307 | 22 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 9 / 124949 | 72 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 22 / 1100989 | 19 | |
| cervix | 8 / 48171 | 166 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 10 / 211054 | 47 | |
| heart | 1 / 89626 | 11 | |
| intestine | 13 / 234472 | 55 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 10 / 336974 | 29 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 9 / 67052 | 134 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 13 / 210574 | 61 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 6 / 330442 | 18 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_6691_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.38 ± 0.3 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.37 ± 0.36 | |
| Basal Part of Pons | 5.65 ± 0.3 | |
| Cerebellar Cortex | 5.52 ± 0.55 | |
| Cerebellar Nuclei | 5.5 ± 0.63 | |
| Claustrum | 5.77 ± 0.52 | |
| Epithalamus | 4.39 ± 0.6 | |
| Frontal Lobe | 5.45 ± 0.46 | |
| Globus Pallidus | 5.22 ± 0.28 | |
| Hypothalamus | 5.09 ± 0.68 | |
| Insula | 5.37 ± 0.24 | |
| Limbic Lobe | 5.34 ± 0.35 | |
| Mesencephalon | 5.37 ± 0.53 | |
| Myelencephalon | 5.34 ± 0.52 | |
| Occipital Lobe | 5.2 ± 0.38 | |
| Parietal Lobe | 5.39 ± 0.37 | |
| Pontine Tegmentum | 5.22 ± 0.5 | |
| Striatum | 4.55 ± 0.5 | |
| Subthalamus | 5.46 ± 0.63 | |
| Temporal Lobe | 5.45 ± 0.36 | |
| Thalamus | 5.62 ± 0.28 | |
| White Matter | 5.42 ± 0.37 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Slc27a4 | CB | Cerebellum | 57.5 | |
| 58.28 | | |||
| Slc27a4 | CTX | Cerebral cortex | 98.8 | |
| 72.65 | | |||
| Slc27a4 | HIP | Hippocampal region | 63.7 | |
| 58.69 | | |||
| Slc27a4 | HPF | Hippocampal formation | 68.87 | |
| 60.18 | | |||
| Slc27a4 | HY | Hypothalamus | 77.54 | |
| 54.06 | | |||
| Slc27a4 | LSX | Lateral septal complex | 67.47 | |
| 41.33 | | |||
| Slc27a4 | MB | Midbrain | 78.74 | |
| 64.52 | | |||
| Slc27a4 | MY | Medulla | 96.42 | |
| 100 | | |||
| Slc27a4 | OLF | Olfactory bulb | 97.63 | |
| 68.07 | | |||
| Slc27a4 | P | Pons | 91.69 | |
| 93.11 | | |||
| Slc27a4 | PAL | Pallidum | 63.95 | |
| 56.65 | | |||
| Slc27a4 | RHP | Retrohippocampal region | 78.14 | |
| 62.8 | | |||
| Slc27a4 | sAMY | Striatum-like amygdalar nuclei | 77.81 | |
| 49.77 | | |||
| Slc27a4 | STR | Striatum | 43.24 | |
| 27.38 | | |||
| Slc27a4 | STRd | Striatum dorsal region | 29.74 | |
| 19.3 | | |||
| Slc27a4 | STRv | Striatum ventral region | 63.92 | |
| 36.97 | | |||
| Slc27a4 | TH | Thalamus | 74.7 | |
| 61.39 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00043243 | 17 | 511 | 527 | WKGENVSTTEVEGTLSR | Peptide Atlas |