AutismKB 2.0

Annotation Detail for SLC27A3


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Basic Information Top
Gene Symbol:SLC27A3 ( ACSVL3,FATP3,MGC4365,VLCS-3 )
Gene Full Name: solute carrier family 27 (fatty acid transporter), member 3
Band: 1q21.3
Quick LinksEntrez ID:11000; OMIM: 604193; Uniprot ID:S27A3_HUMAN; ENSEMBL ID: ENSG00000143554; HGNC ID: 10997
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst4 / 6231964
fetus19 / 56401233
neonate1 / 3109732
infant0 / 236200 
juvenile1 / 5555617
adult65 / 193912133
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor3 / 3436687
chondrosarcoma1 / 8282312
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor14 / 26384553
glioma1 / 1068839
head and neck tumor3 / 13630222
kidney tumor3 / 6895943
leukemia5 / 9584252
liver tumor1 / 9635910
lung tumor7 / 10312767
lymphoma0 / 717550 
non-neoplasia15 / 97250154
normal142 / 336030742
ovarian tumor3 / 7668239
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer0 / 1026800 
retinoblastoma3 / 4635664
skin tumor21 / 124949168
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood11 / 12347889
bone1 / 7165513
bone marrow4 / 4880181
brain40 / 110098936
cervix5 / 48171103
connective tissue11 / 14925573
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus1 / 2020949
eye15 / 21105471
heart2 / 8962622
intestine8 / 23447234
kidney11 / 21177751
larynx0 / 241450 
liver1 / 2077434
lung21 / 33697462
lymph0 / 442700 
lymph node3 / 9161032
mammary gland2 / 15327113
mouth4 / 6705259
muscle0 / 1077150 
nerve1 / 1576863
ovary5 / 10205148
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta17 / 28082560
prostate10 / 18934552
salivary gland0 / 201550 
skin24 / 210574113
spleen4 / 5395274
stomach4 / 9661941
testis16 / 33044248
thymus3 / 8113136
thyroid0 / 474730 
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord1 / 1368073
uterus13 / 23287855
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202809_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts330
Adipocyte99.55
AdrenalCortex135.4
Adrenalgland109.2
Amygdala105.4
Appendix46.8
AtrioventricularNode78.5
BDCA4+_DentriticCells316.35
Bonemarrow81.55
BronchialEpithelialCells82.3
CD105+_Endothelial248.05
CD14+_Monocytes251.65
CD19+_BCells(neg._sel.)214.55
CD33+_Myeloid400.7
CD34+555.25
CD4+_Tcells437.6
CD56+_NKCells199.6
CD71+_EarlyErythroid77.85
CD8+_Tcells425.15
CardiacMyocytes71.1
Caudatenucleus76.9
Cerebellum87.2
CerebellumPeduncles143.15
CiliaryGanglion69.85
CingulateCortex90.95
Colorectaladenocarcinoma61.95
DorsalRootGanglion69.4
FetalThyroid125.15
Fetalbrain213.85
Fetalliver61.55
Fetallung116.4
GlobusPallidus72.1
Heart109.8
Hypothalamus169.45
Kidney78.9
Leukemia_chronicMyelogenousK-56278.1
Leukemia_promyelocytic-HL-6088.9
Leukemialymphoblastic(MOLT-4)72.2
Liver87.3
Lung137.3
Lymphnode156.85
Lymphoma_burkitts(Daudi)103.35
Lymphoma_burkitts(Raji)120.7
MedullaOblongata99
OccipitalLobe101.9
OlfactoryBulb137.5
Ovary77.7
Pancreas78.8
PancreaticIslet87.05
ParietalLobe88.55
Pituitary127.5
Placenta90.1
Pons81.6
PrefrontalCortex221.15
Prostate170.35
Salivarygland69.2
SkeletalMuscle82.75
Skin66.4
SmoothMuscle78.05
Spinalcord118.65
SubthalamicNucleus91.35
SuperiorCervicalGanglion98.65
TemporalLobe61.45
Testis100.5
TestisGermCell161.4
TestisIntersitial124.35
TestisLeydigCell132.2
TestisSeminiferousTubule201.7
Thalamus88
Thymus139.1
Thyroid85.55
Tongue89
Tonsil88.85
Trachea71.25
TrigeminalGanglion104.5
Uterus163.45
UterusCorpus81.65
WholeBlood122.9
Wholebrain116.8
colon71.65
pineal_day357.12
pineal_night316.18
retina154.6
small_intestine69.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_724_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.59 ± 0.66
Basal Forebrain3.53 ± 0.59
Basal Part of Pons3.28 ± 0.62
Cerebellar Cortex3.64 ± 0.64
Cerebellar Nuclei3.64 ± 0.81
Claustrum3.45 ± 0.76
Epithalamus3.31 ± 0.28
Frontal Lobe3.43 ± 0.73
Globus Pallidus2.75 ± 1.12
Hypothalamus3.49 ± 0.72
Insula3.5 ± 0.48
Limbic Lobe3.33 ± 0.65
Mesencephalon3.42 ± 0.6
Myelencephalon3.42 ± 0.71
Occipital Lobe3.22 ± 0.68
Parietal Lobe3.33 ± 0.59
Pontine Tegmentum3.36 ± 0.73
Striatum3.17 ± 0.67
Subthalamus2.91 ± 0.22
Temporal Lobe3.41 ± 0.61
Thalamus3.38 ± 0.59
White Matter2.9 ± 0.75
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc27a3CBCerebellum4.94
5.53
Slc27a3CTXCerebral cortex6.69
5.37
Slc27a3HIPHippocampal region10.58
10.3
Slc27a3HPFHippocampal formation9.47
8.99
Slc27a3HYHypothalamus1.47
0.98
Slc27a3LSXLateral septal complex1.11
1.23
Slc27a3MBMidbrain3.83
3.79
Slc27a3MYMedulla3.16
2.99
Slc27a3OLFOlfactory bulb7.78
6.15
Slc27a3PPons7.33
7.13
Slc27a3PALPallidum0.83
0.78
Slc27a3RHPRetrohippocampal region7.79
7.23
Slc27a3sAMYStriatum-like amygdalar nuclei1.57
1.45
Slc27a3STRStriatum1.08
1.04
Slc27a3STRdStriatum dorsal region1.15
1.2
Slc27a3STRvStriatum ventral region0.69
0.4
Slc27a3THThalamus4.14
3.32
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00095622 25 643 667 DVFRPGDVFFNTGDLLVCDDQGFLR Peptide Atlas
S27A3_HUMAN_0 0 0 0 ALVLAPEFLESLEPDLPALR PRIDE
S27A3_HUMAN_0 0 0 0 LAVGSGLRPDTWER PRIDE
S27A3_HUMAN_0 0 0 0 LQESLATTETFK PRIDE
S27A3_HUMAN_0 0 0 0 MANEGFDPSTLSDPLYVLDQAVGAYLPLTTAR PRIDE
S27A3_HUMAN_0 0 0 0 VTVFQYIGELCR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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