AutismKB 2.0

Annotation Detail for LILRA1


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Basic Information Top
Gene Symbol:LILRA1 ( CD85I,LIR-6,LIR6,MGC126563 )
Gene Full Name: leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1
Band: 19q13.42
Quick LinksEntrez ID:11024; OMIM: 604810; Uniprot ID:LIRA1_HUMAN; ENSEMBL ID: ENSG00000104974; HGNC ID: 6602
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate2 / 3109764
infant0 / 236200 
juvenile0 / 555560 
adult115 / 193912159
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia109 / 958421137
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal28 / 33603078
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood12 / 12347897
bone0 / 716550 
bone marrow109 / 488012233
brain7 / 11009896
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart1 / 8962611
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate3 / 18934515
salivary gland0 / 201550 
skin0 / 2105740 
spleen4 / 5395274
stomach0 / 966190 
testis0 / 3304420 
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207872_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.6
Adipocyte8.4
AdrenalCortex9.45
Adrenalgland7.4
Amygdala8.75
Appendix9.9
AtrioventricularNode10.15
BDCA4+_DentriticCells14.65
Bonemarrow9.55
BronchialEpithelialCells7.6
CD105+_Endothelial8.55
CD14+_Monocytes74.1
CD19+_BCells(neg._sel.)8.6
CD33+_Myeloid65.7
CD34+10.6
CD4+_Tcells9.15
CD56+_NKCells11.35
CD71+_EarlyErythroid7.95
CD8+_Tcells8.1
CardiacMyocytes12.3
Caudatenucleus7.55
Cerebellum6.85
CerebellumPeduncles9.85
CiliaryGanglion10.7
CingulateCortex8.7
Colorectaladenocarcinoma8.55
DorsalRootGanglion8.5
FetalThyroid8.3
Fetalbrain8.4
Fetalliver7
Fetallung6.6
GlobusPallidus6.35
Heart13.6
Hypothalamus8.6
Kidney8.1
Leukemia_chronicMyelogenousK-5627.65
Leukemia_promyelocytic-HL-607.05
Leukemialymphoblastic(MOLT-4)5.85
Liver11.75
Lung9.25
Lymphnode7.25
Lymphoma_burkitts(Daudi)10.85
Lymphoma_burkitts(Raji)12.15
MedullaOblongata7.7
OccipitalLobe7.55
OlfactoryBulb6.45
Ovary7.35
Pancreas7.25
PancreaticIslet9.1
ParietalLobe9.7
Pituitary9.55
Placenta8.15
Pons8.4
PrefrontalCortex10
Prostate9.9
Salivarygland7.5
SkeletalMuscle13.8
Skin9.05
SmoothMuscle9.55
Spinalcord9.05
SubthalamicNucleus7.8
SuperiorCervicalGanglion17.4
TemporalLobe8.1
Testis7.25
TestisGermCell6.95
TestisIntersitial7.15
TestisLeydigCell8.65
TestisSeminiferousTubule7.75
Thalamus8.6
Thymus6.6
Thyroid10.5
Tongue10.2
Tonsil8.25
Trachea7.05
TrigeminalGanglion14.8
Uterus6.9
UterusCorpus8.6
WholeBlood25.95
Wholebrain5.9
colon8.25
pineal_day9.78
pineal_night9.64
retina9.825
small_intestine7.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_9684_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.09 ± 1.03
Basal Forebrain1.65 ± 0.18
Basal Part of Pons1.46 ± 0.48
Cerebellar Cortex1.62 ± 0.84
Cerebellar Nuclei1.97 ± 0.74
Claustrum2.56 ± 0.89
Epithalamus1.46 ± 0.76
Frontal Lobe1.48 ± 0.61
Globus Pallidus2.13 ± 0.29
Hypothalamus1.72 ± 0.64
Insula1.5 ± 0.44
Limbic Lobe1.68 ± 0.7
Mesencephalon1.82 ± 0.68
Myelencephalon1.7 ± 0.65
Occipital Lobe1.74 ± 0.66
Parietal Lobe1.61 ± 0.65
Pontine Tegmentum1.69 ± 0.69
Striatum1.84 ± 0.56
Subthalamus1.82 ± 0.63
Temporal Lobe1.55 ± 0.65
Thalamus1.65 ± 0.59
White Matter2.06 ± 0.25
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00091854 12 180 191 AIFSVGPVSPSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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