AutismKB 2.0

Annotation Detail for SLC35D2


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Basic Information Top
Gene Symbol:SLC35D2 ( HFRC1,MGC117215,MGC142139,SQV7L,UGTrel8,hfrc )
Gene Full Name: solute carrier family 35, member D2
Band: 9q22.32
Quick LinksEntrez ID:11046; OMIM: 609182; Uniprot ID:S35D2_HUMAN; ENSEMBL ID: ENSG00000130958; HGNC ID: 20799
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus17 / 56401230
neonate2 / 3109764
infant0 / 236200 
juvenile0 / 555560 
adult44 / 193912122
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma5 / 8282360
colorectal tumor0 / 1142460 
esophageal tumor1 / 1729057
gastrointestinal tumor8 / 11936967
germ cell tumor2 / 2638457
glioma2 / 10688318
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal71 / 336030721
ovarian tumor0 / 766820 
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS10 / 12568079
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor5 / 12494940
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone2 / 7165527
bone marrow0 / 488010 
brain14 / 110098912
cervix1 / 4817120
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus1 / 2020949
eye3 / 21105414
heart3 / 8962633
intestine6 / 23447225
kidney1 / 2117774
larynx0 / 241450 
liver3 / 20774314
lung9 / 33697426
lymph0 / 442700 
lymph node7 / 9161076
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas5 / 21481223
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta13 / 28082546
prostate4 / 18934521
salivary gland0 / 201550 
skin8 / 21057437
spleen1 / 5395218
stomach4 / 9661941
testis3 / 3304429
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord2 / 13680146
uterus1 / 2328784
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213083_at
Cell line Expression level Expression bar
721_B_lymphoblasts14.1
Adipocyte16.25
AdrenalCortex23.2
Adrenalgland18.1
Amygdala21.8
Appendix31.5
AtrioventricularNode19.6
BDCA4+_DentriticCells18.6
Bonemarrow21.7
BronchialEpithelialCells33.15
CD105+_Endothelial19.3
CD14+_Monocytes55.65
CD19+_BCells(neg._sel.)42.1
CD33+_Myeloid61
CD34+32.15
CD4+_Tcells43.45
CD56+_NKCells68.45
CD71+_EarlyErythroid16.6
CD8+_Tcells46.6
CardiacMyocytes28.9
Caudatenucleus17.4
Cerebellum14.4
CerebellumPeduncles22.65
CiliaryGanglion36.6
CingulateCortex21.65
Colorectaladenocarcinoma100.45
DorsalRootGanglion26.4
FetalThyroid28.75
Fetalbrain14.5
Fetalliver71.25
Fetallung26.2
GlobusPallidus16.55
Heart26.95
Hypothalamus23.95
Kidney23.65
Leukemia_chronicMyelogenousK-56230.05
Leukemia_promyelocytic-HL-6014.75
Leukemialymphoblastic(MOLT-4)13.35
Liver64.15
Lung37.6
Lymphnode42.65
Lymphoma_burkitts(Daudi)24.85
Lymphoma_burkitts(Raji)28.15
MedullaOblongata13.9
OccipitalLobe16.75
OlfactoryBulb32.45
Ovary18.4
Pancreas20.05
PancreaticIslet29.35
ParietalLobe24.25
Pituitary23.15
Placenta34.55
Pons20.8
PrefrontalCortex17.25
Prostate47.15
Salivarygland22.15
SkeletalMuscle21.6
Skin18.65
SmoothMuscle32.95
Spinalcord29.6
SubthalamicNucleus20.75
SuperiorCervicalGanglion36.3
TemporalLobe20.1
Testis34
TestisGermCell14.95
TestisIntersitial14.25
TestisLeydigCell22.65
TestisSeminiferousTubule18
Thalamus20.7
Thymus13.15
Thyroid178.5
Tongue22.15
Tonsil21.5
Trachea29.75
TrigeminalGanglion36.9
Uterus38.6
UterusCorpus16.25
WholeBlood35.8
Wholebrain11.3
colon162.85
pineal_day29.04
pineal_night22.58
retina68.575
small_intestine186.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10672_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.39 ± 0.83
Basal Forebrain3.65 ± 0.86
Basal Part of Pons3.58 ± 0.82
Cerebellar Cortex3.19 ± 0.51
Cerebellar Nuclei4.32 ± 0.72
Claustrum3.26 ± 0.65
Epithalamus3.75 ± 0.75
Frontal Lobe3.62 ± 0.8
Globus Pallidus5.19 ± 0.42
Hypothalamus3.27 ± 0.91
Insula3.34 ± 0.75
Limbic Lobe3.29 ± 0.79
Mesencephalon3.79 ± 0.85
Myelencephalon3.7 ± 0.73
Occipital Lobe3.56 ± 0.79
Parietal Lobe3.61 ± 0.74
Pontine Tegmentum3.61 ± 0.68
Striatum4.2 ± 0.68
Subthalamus3.93 ± 0.36
Temporal Lobe3.36 ± 0.71
Thalamus3.85 ± 0.58
White Matter6.24 ± 0.31
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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