Annotation Detail for DDX52
Basic Information Top
| Gene Symbol: | DDX52 ( HUSSY19,ROK1 ) |
|---|---|
| Gene Full Name: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 |
| Band: | 17q12 |
| Quick Links | Entrez ID:11056; OMIM: 612500; Uniprot ID:DDX52_HUMAN; ENSEMBL ID: ENSG00000141141; HGNC ID: 20038 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.590937
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 19 / 564012 | 33 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 71 / 1939121 | 36 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 23 / 263845 | 87 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 106 / 3360307 | 31 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 3 / 29757 | 100 | |
| blood | 9 / 123478 | 72 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 24 / 1100989 | 21 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 4 / 89626 | 44 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 11 / 207743 | 52 | |
| lung | 5 / 336974 | 14 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 7 / 107715 | 64 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 3 / 41328 | 72 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 9 / 210574 | 42 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 27 / 330442 | 81 | |
| thymus | 5 / 81131 | 61 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 2 / 51780 | 38 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 210320_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 6.8 | |
| Adipocyte | 4.9 | |
| AdrenalCortex | 5.6 | |
| Adrenalgland | 4.2 | |
| Amygdala | 5.25 | |
| Appendix | 5.15 | |
| AtrioventricularNode | 4.4 | |
| BDCA4+_DentriticCells | 5.7 | |
| Bonemarrow | 5.05 | |
| BronchialEpithelialCells | 4.95 | |
| CD105+_Endothelial | 10.35 | |
| CD14+_Monocytes | 5.4 | |
| CD19+_BCells(neg._sel.) | 5.45 | |
| CD33+_Myeloid | 6.5 | |
| CD34+ | 7.05 | |
| CD4+_Tcells | 6.05 | |
| CD56+_NKCells | 8.4 | |
| CD71+_EarlyErythroid | 5.2 | |
| CD8+_Tcells | 5.25 | |
| CardiacMyocytes | 6.7 | |
| Caudatenucleus | 4.5 | |
| Cerebellum | 4.1 | |
| CerebellumPeduncles | 5.7 | |
| CiliaryGanglion | 4.05 | |
| CingulateCortex | 5.05 | |
| Colorectaladenocarcinoma | 5.05 | |
| DorsalRootGanglion | 4.15 | |
| FetalThyroid | 4.9 | |
| Fetalbrain | 4.95 | |
| Fetalliver | 4.35 | |
| Fetallung | 4.15 | |
| GlobusPallidus | 3.75 | |
| Heart | 6.4 | |
| Hypothalamus | 5.55 | |
| Kidney | 4.1 | |
| Leukemia_chronicMyelogenousK-562 | 4.6 | |
| Leukemia_promyelocytic-HL-60 | 7.5 | |
| Leukemialymphoblastic(MOLT-4) | 4.05 | |
| Liver | 6.65 | |
| Lung | 5.45 | |
| Lymphnode | 4.3 | |
| Lymphoma_burkitts(Daudi) | 6.5 | |
| Lymphoma_burkitts(Raji) | 7.1 | |
| MedullaOblongata | 4.6 | |
| OccipitalLobe | 4.5 | |
| OlfactoryBulb | 4 | |
| Ovary | 4.05 | |
| Pancreas | 4.05 | |
| PancreaticIslet | 5.45 | |
| ParietalLobe | 5.25 | |
| Pituitary | 5.85 | |
| Placenta | 5.15 | |
| Pons | 4.75 | |
| PrefrontalCortex | 6.2 | |
| Prostate | 5.9 | |
| Salivarygland | 4 | |
| SkeletalMuscle | 6.25 | |
| Skin | 4.45 | |
| SmoothMuscle | 5.65 | |
| Spinalcord | 5.4 | |
| SubthalamicNucleus | 4.55 | |
| SuperiorCervicalGanglion | 6.3 | |
| TemporalLobe | 4.6 | |
| Testis | 4.35 | |
| TestisGermCell | 4.15 | |
| TestisIntersitial | 4.3 | |
| TestisLeydigCell | 5.1 | |
| TestisSeminiferousTubule | 4.25 | |
| Thalamus | 5.1 | |
| Thymus | 3.9 | |
| Thyroid | 6.4 | |
| Tongue | 5 | |
| Tonsil | 4.9 | |
| Trachea | 4.2 | |
| TrigeminalGanglion | 5.6 | |
| Uterus | 4.15 | |
| UterusCorpus | 4.7 | |
| WholeBlood | 5.45 | |
| Wholebrain | 4.15 | |
| colon | 5.15 | |
| pineal_day | 6.4 | |
| pineal_night | 7.54 | |
| retina | 6.075 | |
| small_intestine | 4.9 | |
- Probe name: A_24_P1929
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.39 ± 0.36 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.49 ± 0.26 | |
| Basal Part of Pons | 7.52 ± 0.27 | |
| Cerebellar Cortex | 7.69 ± 0.14 | |
| Cerebellar Nuclei | 7.68 ± 0.25 | |
| Claustrum | 7.6 ± 0.47 | |
| Epithalamus | 7.89 ± 0.28 | |
| Frontal Lobe | 7.53 ± 0.26 | |
| Globus Pallidus | 7.81 ± 0.22 | |
| Hypothalamus | 7.66 ± 0.19 | |
| Insula | 7.48 ± 0.17 | |
| Limbic Lobe | 7.43 ± 0.27 | |
| Mesencephalon | 7.65 ± 0.29 | |
| Myelencephalon | 7.53 ± 0.25 | |
| Occipital Lobe | 7.74 ± 0.21 | |
| Parietal Lobe | 7.55 ± 0.26 | |
| Pontine Tegmentum | 7.52 ± 0.29 | |
| Striatum | 7.3 ± 0.27 | |
| Subthalamus | 7.64 ± 0.21 | |
| Temporal Lobe | 7.44 ± 0.31 | |
| Thalamus | 7.66 ± 0.29 | |
| White Matter | 7.93 ± 0.16 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ddx52 | CB | Cerebellum | 3.73 | |
| 4.8 | | |||
| Ddx52 | CTX | Cerebral cortex | 4.55 | |
| 3.49 | | |||
| Ddx52 | HIP | Hippocampal region | 3.86 | |
| 3.77 | | |||
| Ddx52 | HPF | Hippocampal formation | 2.5 | |
| 2.24 | | |||
| Ddx52 | HY | Hypothalamus | 0.78 | |
| 0.65 | | |||
| Ddx52 | LSX | Lateral septal complex | 4.04 | |
| 4.71 | | |||
| Ddx52 | MB | Midbrain | 1.45 | |
| 1.6 | | |||
| Ddx52 | MY | Medulla | 6.24 | |
| 8.59 | | |||
| Ddx52 | OLF | Olfactory bulb | 0.88 | |
| 0.59 | | |||
| Ddx52 | P | Pons | 1.6 | |
| 2.56 | | |||
| Ddx52 | PAL | Pallidum | 3.14 | |
| 2.81 | | |||
| Ddx52 | RHP | Retrohippocampal region | 0.35 | |
| 0.23 | | |||
| Ddx52 | sAMY | Striatum-like amygdalar nuclei | 0.54 | |
| 0.37 | | |||
| Ddx52 | STR | Striatum | 2.13 | |
| 2.28 | | |||
| Ddx52 | STRd | Striatum dorsal region | 1.95 | |
| 2.8 | | |||
| Ddx52 | STRv | Striatum ventral region | 2.59 | |
| 1.72 | | |||
| Ddx52 | TH | Thalamus | 6.85 | |
| 9.01 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| DDX52_HUMAN_1 | 8 | 1 | 8 | MDVHDLFR | PRIDE |
| PAp00030161 | 23 | 149 | 171 | IHVQGTDLPDPIATFQQLDQEYK | Peptide Atlas |