Annotation Detail for CHD2
Basic Information Top
| Gene Symbol: | CHD2 ( DKFZp547I1315,DKFZp686E01200,DKFZp781D1727,FLJ38614 ) |
|---|---|
| Gene Full Name: | chromodomain helicase DNA binding protein 2 |
| Band: | 15q26.1 |
| Quick Links | Entrez ID:1106; OMIM: 602119; Uniprot ID:CHD2_HUMAN; ENSEMBL ID: ENSG00000173575; HGNC ID: 1917 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.220864
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 9 / 62319 | 144 | |
| fetus | 99 / 564012 | 175 | |
| neonate | 1 / 31097 | 32 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 370 / 1939121 | 190 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 18 / 94178 | 191 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 10 / 82823 | 120 | |
| colorectal tumor | 19 / 114246 | 166 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 10 / 119369 | 83 | |
| germ cell tumor | 17 / 263845 | 64 | |
| glioma | 12 / 106883 | 112 | |
| head and neck tumor | 33 / 136302 | 242 |  |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 22 / 95842 | 229 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 18 / 103127 | 174 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 12 / 97250 | 123 | |
| normal | 448 / 3360307 | 133 | |
| ovarian tumor | 17 / 76682 | 221 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 | |
| prostate cancer | 17 / 102680 | 165 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 74 / 125191 | 591 | |
| uterine tumor | 13 / 90257 | 144 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 6 / 40015 | 149 | |
| bladder | 2 / 29757 | 67 | |
| blood | 21 / 123478 | 170 | |
| bone | 15 / 71655 | 209 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 84 / 1100989 | 76 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 71 / 149255 | 475 | |
| ear | 4 / 16212 | 246 | |
| embryonic tissue | 28 / 215722 | 129 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 22 / 211054 | 104 | |
| heart | 13 / 89626 | 145 | |
| intestine | 29 / 234472 | 123 | |
| kidney | 25 / 211777 | 118 | |
| larynx | 7 / 24145 | 289 | |
| liver | 53 / 207743 | 255 | |
| lung | 82 / 336974 | 243 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 13 / 91610 | 141 | |
| mammary gland | 26 / 153271 | 169 | |
| mouth | 15 / 67052 | 223 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 23 / 102051 | 225 | |
| pancreas | 25 / 214812 | 116 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 13 / 41328 | 314 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 17 / 280825 | 60 | |
| prostate | 28 / 189345 | 147 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 13 / 210574 | 61 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 5 / 96619 | 51 | |
| testis | 14 / 330442 | 42 | |
| thymus | 16 / 81131 | 197 | |
| thyroid | 11 / 47473 | 231 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 28 / 232878 | 120 | |
| vascular | 5 / 51780 | 96 | |
- Probe name: CUST_1156_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.4 ± 0.28 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.4 ± 0.19 | |
| Basal Part of Pons | 7.32 ± 0.15 | |
| Cerebellar Cortex | 7.37 ± 0.19 | |
| Cerebellar Nuclei | 7.03 ± 0.16 | |
| Claustrum | 7.65 ± 0.33 | |
| Epithalamus | 7.24 ± 0.25 | |
| Frontal Lobe | 7.04 ± 0.32 | |
| Globus Pallidus | 7.73 ± 0.2 | |
| Hypothalamus | 6.94 ± 0.29 | |
| Insula | 7.09 ± 0.24 | |
| Limbic Lobe | 7.2 ± 0.36 | |
| Mesencephalon | 7.19 ± 0.27 | |
| Myelencephalon | 7.13 ± 0.33 | |
| Occipital Lobe | 7.39 ± 0.32 | |
| Parietal Lobe | 7.21 ± 0.36 | |
| Pontine Tegmentum | 7.06 ± 0.36 | |
| Striatum | 7 ± 0.36 | |
| Subthalamus | 7.18 ± 0.13 | |
| Temporal Lobe | 7.07 ± 0.33 | |
| Thalamus | 7.12 ± 0.27 | |
| White Matter | 7.98 ± 0.24 | |
Mouse Brain ISH 
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00011528 | 33 | 1441 | 1473 | SQGPVHITAGSEPVPIGEDEDDDLDQETFSICK | Peptide Atlas |