AutismKB 2.0

Annotation Detail for C10orf10


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Basic Information Top
Gene Symbol:C10orf10 ( DEPP,FIG )
Gene Full Name: chromosome 10 open reading frame 10
Band: 10q11.21
Quick LinksEntrez ID:11067; OMIM: 611309; Uniprot ID:DEPP_HUMAN; ENSEMBL ID: ENSG00000165507; HGNC ID: 23355
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus28 / 56401249
neonate10 / 31097321
infant0 / 236200 
juvenile6 / 55556107
adult340 / 1939121175
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor4 / 34366116
chondrosarcoma8 / 8282396
colorectal tumor2 / 11424617
esophageal tumor7 / 17290404
gastrointestinal tumor15 / 119369125
germ cell tumor16 / 26384560
glioma18 / 106883168
head and neck tumor3 / 13630222
kidney tumor13 / 68959188
leukemia3 / 9584231
liver tumor25 / 96359259
lung tumor5 / 10312748
lymphoma0 / 717550 
non-neoplasia47 / 97250483
normal1112 / 3360307330
ovarian tumor5 / 7668265
pancreatic tumor38 / 104616363
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor8 / 9025788
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue21 / 131061602
adrenal gland12 / 33197361
ascites5 / 40015124
bladder45 / 297571512
blood4 / 12347832
bone4 / 7165555
bone marrow0 / 488010 
brain335 / 1100989304
cervix6 / 48171124
connective tissue86 / 149255576
ear2 / 16212123
embryonic tissue3 / 21572213
esophagus9 / 20209445
eye15 / 21105471
heart37 / 89626412
intestine39 / 234472166
kidney33 / 211777155
larynx0 / 241450 
liver37 / 207743178
lung160 / 336974474
lymph0 / 442700 
lymph node1 / 9161010
mammary gland26 / 153271169
mouth3 / 6705244
muscle6 / 10771555
nerve6 / 15768380
ovary5 / 10205148
pancreas105 / 214812488
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland4 / 16585241
placenta204 / 280825726
prostate11 / 18934558
salivary gland2 / 2015599
skin5 / 21057423
spleen2 / 5395237
stomach27 / 96619279
testis18 / 33044254
thymus99 / 811311220
thyroid2 / 4747342
tonsil0 / 169990 
trachea22 / 52413419
umbilical cord9 / 13680657
uterus69 / 232878296
vascular11 / 51780212
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209182_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.35
Adipocyte4.85
AdrenalCortex5.5
Adrenalgland4.1
Amygdala4.85
Appendix57.45
AtrioventricularNode3.75
BDCA4+_DentriticCells4.9
Bonemarrow4.75
BronchialEpithelialCells4.55
CD105+_Endothelial4.8
CD14+_Monocytes4.7
CD19+_BCells(neg._sel.)4.9
CD33+_Myeloid5.85
CD34+5.7
CD4+_Tcells4.9
CD56+_NKCells5.5
CD71+_EarlyErythroid4.45
CD8+_Tcells4.4
CardiacMyocytes6.35
Caudatenucleus4.35
Cerebellum4.05
CerebellumPeduncles5.95
CiliaryGanglion13.7
CingulateCortex5
Colorectaladenocarcinoma4.85
DorsalRootGanglion3.9
FetalThyroid5.5
Fetalbrain4.75
Fetalliver4.15
Fetallung23.65
GlobusPallidus3.6
Heart12.05
Hypothalamus5.3
Kidney3.95
Leukemia_chronicMyelogenousK-5624.3
Leukemia_promyelocytic-HL-604.25
Leukemialymphoblastic(MOLT-4)3.8
Liver8.15
Lung452
Lymphnode6.8
Lymphoma_burkitts(Daudi)6.15
Lymphoma_burkitts(Raji)6.75
MedullaOblongata4.85
OccipitalLobe4.3
OlfactoryBulb24.55
Ovary39
Pancreas5.05
PancreaticIslet317.45
ParietalLobe5.15
Pituitary5.65
Placenta98.45
Pons5.3
PrefrontalCortex9.05
Prostate6.5
Salivarygland3.8
SkeletalMuscle5.75
Skin4
SmoothMuscle5.4
Spinalcord7.65
SubthalamicNucleus4.35
SuperiorCervicalGanglion5.55
TemporalLobe4.45
Testis4.05
TestisGermCell4.25
TestisIntersitial3.95
TestisLeydigCell4.75
TestisSeminiferousTubule4
Thalamus4.8
Thymus3.95
Thyroid9.45
Tongue4.8
Tonsil5
Trachea18.85
TrigeminalGanglion6.55
Uterus17.45
UterusCorpus72.8
WholeBlood5.2
Wholebrain4.2
colon7.25
pineal_day5.88
pineal_night5.72
retina11.075
small_intestine4.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P35597
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.65 ± 0.96
Basal Forebrain2.5 ± 0.37
Basal Part of Pons2.83 ± 0.88
Cerebellar Cortex3.37 ± 0.54
Cerebellar Nuclei2.94 ± 0.89
Claustrum3.03 ± 0.53
Epithalamus3.06 ± 0.86
Frontal Lobe2.86 ± 0.71
Globus Pallidus3.31 ± 0.6
Hypothalamus3.03 ± 0.74
Insula2.44 ± 0.65
Limbic Lobe2.53 ± 0.81
Mesencephalon2.87 ± 0.75
Myelencephalon2.94 ± 0.64
Occipital Lobe2.71 ± 0.62
Parietal Lobe2.88 ± 0.74
Pontine Tegmentum2.79 ± 0.62
Striatum2.9 ± 0.8
Subthalamus3.2 ± 0.55
Temporal Lobe2.81 ± 0.73
Thalamus3.1 ± 0.6
White Matter1.93 ± 0.53
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
8430408G22RikCBCerebellum1.57
1.74
8430408G22RikCTXCerebral cortex1.3
0.96
8430408G22RikHIPHippocampal region1.28
1.07
8430408G22RikHPFHippocampal formation1.25
0.99
8430408G22RikHYHypothalamus3.27
4.23
8430408G22RikLSXLateral septal complex0.22
0.21
8430408G22RikMBMidbrain1.21
1.16
8430408G22RikMYMedulla5.84
6.63
8430408G22RikOLFOlfactory bulb4.47
3.47
8430408G22RikPPons4.25
5.78
8430408G22RikPALPallidum1.33
1.26
8430408G22RikRHPRetrohippocampal region1.3
0.95
8430408G22RiksAMYStriatum-like amygdalar nuclei0.64
0.89
8430408G22RikSTRStriatum1.24
1.05
8430408G22RikSTRdStriatum dorsal region0.4
0.32
8430408G22RikSTRvStriatum ventral region4.23
3.22
8430408G22RikTHThalamus0.93
0.69
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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