Annotation Detail for KRR1
Basic Information Top
Gene Symbol: | KRR1 ( HRB2,RIP-1 ) |
---|---|
Gene Full Name: | KRR1, small subunit (SSU) processome component, homolog (yeast) |
Band: | 12q21.2 |
Quick Links | Entrez ID:11103; OMIM: 612817; Uniprot ID:KRR1_HUMAN; ENSEMBL ID: ENSG00000111615; HGNC ID: 5176 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.645517
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 5 / 70761 | 70 | |
blastocyst | 2 / 62319 | 32 | |
fetus | 17 / 564012 | 30 | |
neonate | 1 / 31097 | 32 | |
infant | 0 / 23620 | 0 | |
juvenile | 3 / 55556 | 53 | |
adult | 55 / 1939121 | 28 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 6 / 17475 | 343 | |
breast (mammary gland) tumor | 3 / 94178 | 31 | |
cervical tumor | 1 / 34366 | 29 | |
chondrosarcoma | 3 / 82823 | 36 | |
colorectal tumor | 7 / 114246 | 61 | |
esophageal tumor | 1 / 17290 | 57 | |
gastrointestinal tumor | 3 / 119369 | 25 | |
germ cell tumor | 12 / 263845 | 45 | |
glioma | 1 / 106883 | 9 | |
head and neck tumor | 2 / 136302 | 14 | |
kidney tumor | 2 / 68959 | 29 | |
leukemia | 5 / 95842 | 52 | |
liver tumor | 1 / 96359 | 10 | |
lung tumor | 7 / 103127 | 67 | |
lymphoma | 3 / 71755 | 41 | |
non-neoplasia | 1 / 97250 | 10 | |
normal | 104 / 3360307 | 30 | |
ovarian tumor | 0 / 76682 | 0 | |
pancreatic tumor | 2 / 104616 | 19 | |
primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
prostate cancer | 6 / 102680 | 58 | |
retinoblastoma | 3 / 46356 | 64 | |
skin tumor | 6 / 124949 | 48 | |
soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
uterine tumor | 0 / 90257 | 0 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 1 / 33197 | 30 | |
ascites | 2 / 40015 | 49 | |
bladder | 6 / 29757 | 201 | |
blood | 7 / 123478 | 56 | |
bone | 2 / 71655 | 27 | |
bone marrow | 2 / 48801 | 40 | |
brain | 18 / 1100989 | 16 | |
cervix | 1 / 48171 | 20 | |
connective tissue | 4 / 149255 | 26 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 14 / 215722 | 64 | |
esophagus | 1 / 20209 | 49 | |
eye | 4 / 211054 | 18 | |
heart | 2 / 89626 | 22 | |
intestine | 9 / 234472 | 38 | |
kidney | 8 / 211777 | 37 | |
larynx | 1 / 24145 | 41 | |
liver | 8 / 207743 | 38 | |
lung | 21 / 336974 | 62 | |
lymph | 1 / 44270 | 22 | |
lymph node | 8 / 91610 | 87 | |
mammary gland | 6 / 153271 | 39 | |
mouth | 0 / 67052 | 0 | |
muscle | 4 / 107715 | 37 | |
nerve | 1 / 15768 | 63 | |
ovary | 0 / 102051 | 0 | |
pancreas | 6 / 214812 | 27 | |
parathyroid | 1 / 20539 | 48 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 1 / 16585 | 60 | |
placenta | 12 / 280825 | 42 | |
prostate | 5 / 189345 | 26 | |
salivary gland | 2 / 20155 | 99 | |
skin | 7 / 210574 | 33 | |
spleen | 0 / 53952 | 0 | |
stomach | 1 / 96619 | 10 | |
testis | 14 / 330442 | 42 | |
thymus | 4 / 81131 | 49 | |
thyroid | 1 / 47473 | 21 | |
tonsil | 0 / 16999 | 0 | |
trachea | 2 / 52413 | 38 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 4 / 232878 | 17 | |
vascular | 1 / 51780 | 19 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 203202_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 79.35 | |
Adipocyte | 7.3 | |
AdrenalCortex | 8.75 | |
Adrenalgland | 6.5 | |
Amygdala | 9.5 | |
Appendix | 9.05 | |
AtrioventricularNode | 7.45 | |
BDCA4+_DentriticCells | 110.65 | |
Bonemarrow | 7.9 | |
BronchialEpithelialCells | 11.5 | |
CD105+_Endothelial | 156.6 | |
CD14+_Monocytes | 13.15 | |
CD19+_BCells(neg._sel.) | 61.25 | |
CD33+_Myeloid | 14.7 | |
CD34+ | 144.2 | |
CD4+_Tcells | 49.4 | |
CD56+_NKCells | 90.05 | |
CD71+_EarlyErythroid | 60.55 | |
CD8+_Tcells | 32.25 | |
CardiacMyocytes | 19.75 | |
Caudatenucleus | 6.6 | |
Cerebellum | 6.2 | |
CerebellumPeduncles | 9 | |
CiliaryGanglion | 7.5 | |
CingulateCortex | 7.8 | |
Colorectaladenocarcinoma | 9.7 | |
DorsalRootGanglion | 6.65 | |
FetalThyroid | 9.3 | |
Fetalbrain | 7.65 | |
Fetalliver | 6.7 | |
Fetallung | 7.9 | |
GlobusPallidus | 5.65 | |
Heart | 10.65 | |
Hypothalamus | 7.75 | |
Kidney | 6.4 | |
Leukemia_chronicMyelogenousK-562 | 7.7 | |
Leukemia_promyelocytic-HL-60 | 8.4 | |
Leukemialymphoblastic(MOLT-4) | 10.65 | |
Liver | 11.05 | |
Lung | 8 | |
Lymphnode | 7.15 | |
Lymphoma_burkitts(Daudi) | 10.3 | |
Lymphoma_burkitts(Raji) | 10.9 | |
MedullaOblongata | 7.3 | |
OccipitalLobe | 6.5 | |
OlfactoryBulb | 5.9 | |
Ovary | 6.25 | |
Pancreas | 6.4 | |
PancreaticIslet | 8.1 | |
ParietalLobe | 8.35 | |
Pituitary | 9.25 | |
Placenta | 7.25 | |
Pons | 7.4 | |
PrefrontalCortex | 10 | |
Prostate | 8.65 | |
Salivarygland | 6.35 | |
SkeletalMuscle | 9.4 | |
Skin | 6.95 | |
SmoothMuscle | 26.15 | |
Spinalcord | 7.8 | |
SubthalamicNucleus | 6.95 | |
SuperiorCervicalGanglion | 9.45 | |
TemporalLobe | 7.05 | |
Testis | 5.95 | |
TestisGermCell | 6.15 | |
TestisIntersitial | 6.7 | |
TestisLeydigCell | 7.75 | |
TestisSeminiferousTubule | 6.2 | |
Thalamus | 7.5 | |
Thymus | 5.95 | |
Thyroid | 15.55 | |
Tongue | 8.45 | |
Tonsil | 8.2 | |
Trachea | 6.6 | |
TrigeminalGanglion | 9.25 | |
Uterus | 8.45 | |
UterusCorpus | 7.3 | |
WholeBlood | 14.45 | |
Wholebrain | 6.1 | |
colon | 7.65 | |
pineal_day | 12.58 | |
pineal_night | 16.36 | |
retina | 8.125 | |
small_intestine | 7.05 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: A_23_P2216
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 9.14 ± 0.15 | |
Basal Forebrain | 8.94 ± 0.15 | |
Basal Part of Pons | 8.91 ± 0.28 | |
Cerebellar Cortex | 9.22 ± 0.13 | |
Cerebellar Nuclei | 8.77 ± 0.19 | |
Claustrum | 9.05 ± 0.21 | |
Epithalamus | 9.15 ± 0.21 | |
Frontal Lobe | 8.99 ± 0.24 | |
Globus Pallidus | 8.71 ± 0.19 | |
Hypothalamus | 9.1 ± 0.17 | |
Insula | 9.17 ± 0.27 | |
Limbic Lobe | 9.1 ± 0.3 | |
Mesencephalon | 9.06 ± 0.22 | |
Myelencephalon | 8.99 ± 0.23 | |
Occipital Lobe | 9.18 ± 0.23 | |
Parietal Lobe | 9.07 ± 0.19 | |
Pontine Tegmentum | 9.02 ± 0.19 | |
Striatum | 8.93 ± 0.22 | |
Subthalamus | 8.95 ± 0.18 | |
Temporal Lobe | 9.05 ± 0.2 | |
Thalamus | 8.94 ± 0.14 | |
White Matter | 9.14 ± 0.16 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Krr1 | CB | Cerebellum | 9.63 | |
10.83 | ||||
Krr1 | CTX | Cerebral cortex | 27.61 | |
19.93 | ||||
Krr1 | HIP | Hippocampal region | 17.96 | |
19.46 | ||||
Krr1 | HPF | Hippocampal formation | 18.55 | |
17.57 | ||||
Krr1 | HY | Hypothalamus | 4.26 | |
3.18 | ||||
Krr1 | LSX | Lateral septal complex | 8.32 | |
5.09 | ||||
Krr1 | MB | Midbrain | 9.44 | |
7.9 | ||||
Krr1 | MY | Medulla | 9.01 | |
8.73 | ||||
Krr1 | OLF | Olfactory bulb | 15.57 | |
11.98 | ||||
Krr1 | P | Pons | 6.12 | |
6.09 | ||||
Krr1 | PAL | Pallidum | 5.47 | |
4.5 | ||||
Krr1 | RHP | Retrohippocampal region | 19.55 | |
15.02 | ||||
Krr1 | sAMY | Striatum-like amygdalar nuclei | 3.2 | |
2.05 | ||||
Krr1 | STR | Striatum | 6.8 | |
4.52 | ||||
Krr1 | STRd | Striatum dorsal region | 7.24 | |
5.05 | ||||
Krr1 | STRv | Striatum ventral region | 6.76 | |
3.91 | ||||
Krr1 | TH | Thalamus | 13.48 | |
10.96 |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00024173 | 24 | 82 | 105 | ALNEHHVNATLDLIEGSMTVCTTK | Peptide Atlas |