Annotation Detail for POLR3A
Basic Information Top
| Gene Symbol: | POLR3A ( RPC1,RPC155,hRPC155 ) |
|---|---|
| Gene Full Name: | polymerase (RNA) III (DNA directed) polypeptide A, 155kDa |
| Band: | 10q22.3 |
| Quick Links | Entrez ID:11128; OMIM: NA; Uniprot ID:RPC1_HUMAN; ENSEMBL ID: ENSG00000148606; HGNC ID: 30074 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.436896
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 6 / 62319 | 96 |  |
| fetus | 19 / 564012 | 33 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 65 / 1939121 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 6 / 94178 | 63 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 12 / 114246 | 105 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 11 / 263845 | 41 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 122 / 3360307 | 36 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 57 / 1100989 | 51 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 10 / 211054 | 47 | |
| heart | 2 / 89626 | 22 | |
| intestine | 16 / 234472 | 68 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 1 / 24145 | 41 | |
| liver | 6 / 207743 | 28 | |
| lung | 10 / 336974 | 29 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 10 / 330442 | 30 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_24_P85283
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.35 ± 0.29 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.02 ± 0.24 | |
| Basal Part of Pons | 7.77 ± 0.29 | |
| Cerebellar Cortex | 7.28 ± 0.18 | |
| Cerebellar Nuclei | 6.93 ± 0.55 | |
| Claustrum | 7.37 ± 0.25 | |
| Epithalamus | 6.72 ± 0.39 | |
| Frontal Lobe | 7.2 ± 0.33 | |
| Globus Pallidus | 6.54 ± 0.22 | |
| Hypothalamus | 6.99 ± 0.4 | |
| Insula | 7.31 ± 0.35 | |
| Limbic Lobe | 7.38 ± 0.3 | |
| Mesencephalon | 7.23 ± 0.38 | |
| Myelencephalon | 7.18 ± 0.35 | |
| Occipital Lobe | 7.33 ± 0.24 | |
| Parietal Lobe | 7.41 ± 0.29 | |
| Pontine Tegmentum | 7.15 ± 0.24 | |
| Striatum | 6.74 ± 0.36 | |
| Subthalamus | 7.07 ± 0.46 | |
| Temporal Lobe | 7.43 ± 0.25 | |
| Thalamus | 7.15 ± 0.29 | |
| White Matter | 6.67 ± 0.39 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Polr3a | CB | Cerebellum | 7.96 | |
| 8.25 | | |||
| Polr3a | CTX | Cerebral cortex | 10.26 | |
| 7.59 | | |||
| Polr3a | HIP | Hippocampal region | 9.58 | |
| 8.68 | | |||
| Polr3a | HPF | Hippocampal formation | 9.48 | |
| 7.77 | | |||
| Polr3a | HY | Hypothalamus | 1.62 | |
| 1.11 | | |||
| Polr3a | LSX | Lateral septal complex | 0.48 | |
| 0.55 | | |||
| Polr3a | MB | Midbrain | 3.95 | |
| 3.52 | | |||
| Polr3a | MY | Medulla | 9.23 | |
| 9.58 | | |||
| Polr3a | OLF | Olfactory bulb | 13.52 | |
| 9.57 | | |||
| Polr3a | P | Pons | 6.63 | |
| 6.56 | | |||
| Polr3a | PAL | Pallidum | 3.28 | |
| 2.28 | | |||
| Polr3a | RHP | Retrohippocampal region | 9.46 | |
| 6.4 | | |||
| Polr3a | sAMY | Striatum-like amygdalar nuclei | 1.94 | |
| 1.41 | | |||
| Polr3a | STR | Striatum | 2.71 | |
| 1.97 | | |||
| Polr3a | STRd | Striatum dorsal region | 2.95 | |
| 2.21 | | |||
| Polr3a | STRv | Striatum ventral region | 3.37 | |
| 2.12 | | |||
| Polr3a | TH | Thalamus | 2.61 | |
| 1.98 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00063481 | 21 | 1079 | 1099 | AISTPIITAQLDKDDDADYAR | Peptide Atlas |