AutismKB 2.0

Annotation Detail for CHGA


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Basic Information Top
Gene Symbol:CHGA ( CGA )
Gene Full Name: chromogranin A (parathyroid secretory protein 1)
Band: 14q32.12
Quick LinksEntrez ID:1113; OMIM: 118910; Uniprot ID:CMGA_HUMAN; ENSEMBL ID: ENSG00000100604; HGNC ID: 1929
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus17 / 56401230
neonate0 / 310970 
infant1 / 2362042
juvenile2 / 5555635
adult81 / 193912141
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor9 / 12794703
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor2 / 2638457
glioma3 / 10688328
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor3 / 10312729
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal125 / 336030737
ovarian tumor0 / 766820 
pancreatic tumor21 / 104616200
primitive neuroectodermal tumor of the CNS170 / 1256801352
prostate cancer0 / 1026800 
retinoblastoma13 / 46356280
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland15 / 33197451
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain133 / 1100989120
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus1 / 2020949
eye13 / 21105461
heart0 / 896260 
intestine10 / 23447242
kidney2 / 2117779
larynx0 / 241450 
liver0 / 2077430 
lung15 / 33697444
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle1 / 1077159
nerve2 / 15768126
ovary1 / 1020519
pancreas64 / 214812297
parathyroid33 / 205391606
pharynx0 / 413280 
pituitary gland8 / 16585482
placenta2 / 2808257
prostate3 / 18934515
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach5 / 9661951
testis8 / 33044224
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204697_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.1
Adipocyte15.3
AdrenalCortex1168.45
Adrenalgland633.95
Amygdala185.6
Appendix8.5
AtrioventricularNode5.9
BDCA4+_DentriticCells5.55
Bonemarrow9.7
BronchialEpithelialCells13.15
CD105+_Endothelial5.3
CD14+_Monocytes6.1
CD19+_BCells(neg._sel.)6.2
CD33+_Myeloid7.25
CD34+5.95
CD4+_Tcells6.45
CD56+_NKCells6.35
CD71+_EarlyErythroid5.4
CD8+_Tcells7.05
CardiacMyocytes14.2
Caudatenucleus59.5
Cerebellum10.15
CerebellumPeduncles12.5
CiliaryGanglion8
CingulateCortex394.85
Colorectaladenocarcinoma8.5
DorsalRootGanglion7.5
FetalThyroid89.35
Fetalbrain93.6
Fetalliver9.8
Fetallung8.65
GlobusPallidus80.95
Heart14.3
Hypothalamus181.4
Kidney8
Leukemia_chronicMyelogenousK-56210.15
Leukemia_promyelocytic-HL-608.7
Leukemialymphoblastic(MOLT-4)7.15
Liver15.85
Lung11.55
Lymphnode8.15
Lymphoma_burkitts(Daudi)13.1
Lymphoma_burkitts(Raji)23.9
MedullaOblongata386.2
OccipitalLobe149.9
OlfactoryBulb7.25
Ovary9.9
Pancreas56.7
PancreaticIslet6540.25
ParietalLobe271.65
Pituitary1563.15
Placenta9.95
Pons251.55
PrefrontalCortex540.05
Prostate27.4
Salivarygland10.4
SkeletalMuscle21.95
Skin6.1
SmoothMuscle10.35
Spinalcord66.45
SubthalamicNucleus337.1
SuperiorCervicalGanglion17
TemporalLobe358.95
Testis136.75
TestisGermCell244.3
TestisIntersitial14.8
TestisLeydigCell78.45
TestisSeminiferousTubule60.35
Thalamus213.1
Thymus6.3
Thyroid533.6
Tongue11.15
Tonsil10.65
Trachea11.05
TrigeminalGanglion13.1
Uterus9.5
UterusCorpus22.8
WholeBlood12
Wholebrain385.65
colon107.1
pineal_day22.32
pineal_night14.42
retina22.5
small_intestine182.9
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15559_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.48 ± 0.57
Basal Forebrain7.17 ± 0.7
Basal Part of Pons6.94 ± 0.51
Cerebellar Cortex5.5 ± 0.61
Cerebellar Nuclei6.64 ± 0.61
Claustrum6.88 ± 0.88
Epithalamus4.3 ± 0.97
Frontal Lobe6.61 ± 0.78
Globus Pallidus6.69 ± 0.78
Hypothalamus5.98 ± 0.64
Insula6.26 ± 0.64
Limbic Lobe7.01 ± 0.85
Mesencephalon6.53 ± 1.05
Myelencephalon6.59 ± 0.97
Occipital Lobe7.78 ± 1.05
Parietal Lobe7.03 ± 0.68
Pontine Tegmentum6.52 ± 0.67
Striatum5.73 ± 1.36
Subthalamus6.8 ± 0.23
Temporal Lobe6.5 ± 0.75
Thalamus6.42 ± 0.95
White Matter3.66 ± 1.89
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
ChgaCBCerebellum100
100
ChgaCTXCerebral cortex100
100
ChgaHIPHippocampal region100
100
ChgaHPFHippocampal formation100
100
ChgaHYHypothalamus100
100
ChgaLSXLateral septal complex100
100
ChgaMBMidbrain100
100
ChgaMYMedulla100
100
ChgaOLFOlfactory bulb100
100
ChgaPPons100
100
ChgaPALPallidum100
100
ChgaRHPRetrohippocampal region100
100
ChgasAMYStriatum-like amygdalar nuclei100
100
ChgaSTRStriatum100
100
ChgaSTRdStriatum dorsal region100
100
ChgaSTRvStriatum ventral region100
100
ChgaTHThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00136831 9 447 455 VAHQLQALR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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