AutismKB 2.0

Annotation Detail for CAPN10


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Basic Information Top
Gene Symbol:CAPN10 ( CANP10,NIDDM1 )
Gene Full Name: calpain 10
Band: 2q37.3
Quick LinksEntrez ID:11132; OMIM: 605286; Uniprot ID:CAN10_HUMAN; ENSEMBL ID: ENSG00000142330; HGNC ID: 1477
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst3 / 6231948
fetus14 / 56401224
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult31 / 193912115
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor10 / 26384537
glioma1 / 1068839
head and neck tumor4 / 13630229
kidney tumor0 / 689590 
leukemia4 / 9584241
liver tumor1 / 9635910
lung tumor8 / 10312777
lymphoma9 / 71755125
non-neoplasia0 / 972500 
normal95 / 336030728
ovarian tumor0 / 766820 
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS12 / 12568095
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor4 / 12494932
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood9 / 12347872
bone1 / 7165513
bone marrow0 / 488010 
brain38 / 110098934
cervix1 / 4817120
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye6 / 21105428
heart2 / 8962622
intestine3 / 23447212
kidney1 / 2117774
larynx0 / 241450 
liver1 / 2077434
lung10 / 33697429
lymph9 / 44270203
lymph node2 / 9161021
mammary gland1 / 1532716
mouth0 / 670520 
muscle4 / 10771537
nerve1 / 1576863
ovary0 / 1020510 
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta3 / 28082510
prostate5 / 18934526
salivary gland3 / 20155148
skin4 / 21057418
spleen5 / 5395292
stomach0 / 966190 
testis13 / 33044239
thymus10 / 81131123
thyroid1 / 4747321
tonsil1 / 1699958
trachea3 / 5241357
umbilical cord0 / 136800 
uterus7 / 23287830
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219333_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7
Adipocyte5.85
AdrenalCortex7.1
Adrenalgland5.75
Amygdala5.75
Appendix5
AtrioventricularNode3.9
BDCA4+_DentriticCells6
Bonemarrow5.2
BronchialEpithelialCells4.5
CD105+_Endothelial4.7
CD14+_Monocytes6.45
CD19+_BCells(neg._sel.)5.85
CD33+_Myeloid6.95
CD34+6.45
CD4+_Tcells6.1
CD56+_NKCells6.7
CD71+_EarlyErythroid3.5
CD8+_Tcells5.6
CardiacMyocytes5.7
Caudatenucleus8.95
Cerebellum7.45
CerebellumPeduncles9.15
CiliaryGanglion3.75
CingulateCortex6.6
Colorectaladenocarcinoma5.1
DorsalRootGanglion4.15
FetalThyroid5.2
Fetalbrain5.85
Fetalliver4.6
Fetallung4.45
GlobusPallidus3.9
Heart6.7
Hypothalamus5.95
Kidney6
Leukemia_chronicMyelogenousK-5624.95
Leukemia_promyelocytic-HL-604.75
Leukemialymphoblastic(MOLT-4)5.75
Liver7.05
Lung6.3
Lymphnode5.8
Lymphoma_burkitts(Daudi)7.65
Lymphoma_burkitts(Raji)7.4
MedullaOblongata5
OccipitalLobe4.75
OlfactoryBulb5.5
Ovary3.55
Pancreas4.25
PancreaticIslet5.45
ParietalLobe5.6
Pituitary6.85
Placenta5.1
Pons5.15
PrefrontalCortex9.15
Prostate6.65
Salivarygland4.3
SkeletalMuscle6.15
Skin3.95
SmoothMuscle5.25
Spinalcord7.7
SubthalamicNucleus4.9
SuperiorCervicalGanglion5.9
TemporalLobe5
Testis4.95
TestisGermCell4.5
TestisIntersitial4.5
TestisLeydigCell5.35
TestisSeminiferousTubule6.1
Thalamus5.5
Thymus5.25
Thyroid5.75
Tongue5.3
Tonsil4.7
Trachea4.45
TrigeminalGanglion5.45
Uterus4.1
UterusCorpus4.55
WholeBlood5.9
Wholebrain5.05
colon5.4
pineal_day6.14
pineal_night5.92
retina5.075
small_intestine4.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_17083_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.8 ± 0.76
Basal Forebrain5.62 ± 0.2
Basal Part of Pons5.28 ± 0.37
Cerebellar Cortex5.08 ± 0.35
Cerebellar Nuclei5.92 ± 0.51
Claustrum6.3 ± 0.72
Epithalamus4.73 ± 0.38
Frontal Lobe5.35 ± 0.56
Globus Pallidus6.02 ± 0.25
Hypothalamus5.07 ± 0.54
Insula5.01 ± 0.57
Limbic Lobe5.56 ± 0.63
Mesencephalon5.64 ± 0.54
Myelencephalon5.57 ± 0.68
Occipital Lobe5.55 ± 0.66
Parietal Lobe5.59 ± 0.64
Pontine Tegmentum5.47 ± 0.63
Striatum6 ± 0.59
Subthalamus5.73 ± 0.37
Temporal Lobe5.34 ± 0.54
Thalamus5.7 ± 0.51
White Matter5.45 ± 0.66
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Capn10CBCerebellum13.23
21.97
Capn10CTXCerebral cortex7.94
5.88
Capn10HIPHippocampal region16.89
16.4
Capn10HPFHippocampal formation12.47
10.99
Capn10HYHypothalamus0.72
0.59
Capn10LSXLateral septal complex0.14
0.09
Capn10MBMidbrain2.52
2.52
Capn10MYMedulla1.03
1.36
Capn10OLFOlfactory bulb5.68
4.92
Capn10PPons1.53
2.28
Capn10PALPallidum1.27
1.08
Capn10RHPRetrohippocampal region6.69
4.95
Capn10sAMYStriatum-like amygdalar nuclei0.75
0.8
Capn10STRStriatum1.38
1.21
Capn10STRdStriatum dorsal region1.38
1.3
Capn10STRvStriatum ventral region2.45
1.76
Capn10THThalamus11.97
9.58
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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