AutismKB 2.0

Annotation Detail for FICD


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Basic Information Top
Gene Symbol:FICD ( HIP13,HYPE,MGC5623,UNQ3041 )
Gene Full Name: FIC domain containing
Band: 12q23.3
Quick LinksEntrez ID:11153; OMIM: NA; Uniprot ID:FICD_HUMAN; ENSEMBL ID: ENSG00000198855; HGNC ID: 18416
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult21 / 193912110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor3 / 12794234
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma3 / 8282336
colorectal tumor3 / 11424626
esophageal tumor1 / 1729057
gastrointestinal tumor2 / 11936916
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal32 / 33603079
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland3 / 3319790
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone2 / 7165527
bone marrow0 / 488010 
brain7 / 11009896
cervix1 / 4817120
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus1 / 2020949
eye1 / 2110544
heart0 / 896260 
intestine5 / 23447221
kidney5 / 21177723
larynx0 / 241450 
liver1 / 2077434
lung3 / 3369748
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle3 / 10771527
nerve0 / 157680 
ovary0 / 1020510 
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate1 / 1893455
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach0 / 966190 
testis4 / 33044212
thymus0 / 811310 
thyroid3 / 4747363
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219910_at
Cell line Expression level Expression bar
721_B_lymphoblasts3.8
Adipocyte2.95
AdrenalCortex3.2
Adrenalgland3
Amygdala3.2
Appendix3
AtrioventricularNode2.25
BDCA4+_DentriticCells3.3
Bonemarrow2.9
BronchialEpithelialCells2.85
CD105+_Endothelial3.05
CD14+_Monocytes3.2
CD19+_BCells(neg._sel.)3.2
CD33+_Myeloid3.75
CD34+3.6
CD4+_Tcells3.35
CD56+_NKCells3.65
CD71+_EarlyErythroid2.7
CD8+_Tcells2.95
CardiacMyocytes3.75
Caudatenucleus2.7
Cerebellum3.35
CerebellumPeduncles3.4
CiliaryGanglion2.05
CingulateCortex3.1
Colorectaladenocarcinoma3
DorsalRootGanglion2.25
FetalThyroid2.95
Fetalbrain3.05
Fetalliver2.6
Fetallung2.45
GlobusPallidus2.5
Heart3.8
Hypothalamus3.3
Kidney2.4
Leukemia_chronicMyelogenousK-5622.75
Leukemia_promyelocytic-HL-602.65
Leukemialymphoblastic(MOLT-4)2.45
Liver6.15
Lung3.3
Lymphnode2.6
Lymphoma_burkitts(Daudi)3.85
Lymphoma_burkitts(Raji)4.15
MedullaOblongata3.3
OccipitalLobe2.75
OlfactoryBulb2.4
Ovary2
Pancreas2.4
PancreaticIslet8.8
ParietalLobe3.15
Pituitary11.9
Placenta3.15
Pons2.85
PrefrontalCortex3.8
Prostate3.8
Salivarygland2.4
SkeletalMuscle3.35
Skin2.25
SmoothMuscle3.45
Spinalcord3.35
SubthalamicNucleus2.7
SuperiorCervicalGanglion3.35
TemporalLobe2.75
Testis2.6
TestisGermCell2.55
TestisIntersitial2.5
TestisLeydigCell3
TestisSeminiferousTubule2.6
Thalamus3
Thymus2.4
Thyroid3.8
Tongue2.95
Tonsil2.9
Trachea3.2
TrigeminalGanglion2.95
Uterus2.6
UterusCorpus2.65
WholeBlood3.3
Wholebrain2.7
colon3.05
pineal_day3.76
pineal_night3.7
retina4.175
small_intestine3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1464_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.38 ± 0.8
Basal Forebrain1.87 ± 0.53
Basal Part of Pons1.92 ± 0.38
Cerebellar Cortex2.48 ± 0.37
Cerebellar Nuclei2.29 ± 0.47
Claustrum2.32 ± 0.85
Epithalamus2.15 ± 0.65
Frontal Lobe2.19 ± 0.71
Globus Pallidus2.46 ± 0.6
Hypothalamus2.1 ± 0.66
Insula1.9 ± 0.66
Limbic Lobe2 ± 0.65
Mesencephalon2.25 ± 0.73
Myelencephalon2.19 ± 0.62
Occipital Lobe2.03 ± 0.69
Parietal Lobe2.05 ± 0.7
Pontine Tegmentum2.02 ± 0.71
Striatum1.89 ± 0.62
Subthalamus1.98 ± 0.69
Temporal Lobe2.04 ± 0.66
Thalamus2.16 ± 0.7
White Matter3.1 ± 0.52
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
D5Ertd40eCBCerebellum0.47
0.5
D5Ertd40eCTXCerebral cortex0.24
0.22
D5Ertd40eHIPHippocampal region0.13
0.11
D5Ertd40eHPFHippocampal formation0.24
0.17
D5Ertd40eHYHypothalamus0.02
0.02
D5Ertd40eLSXLateral septal complex0.04
0
D5Ertd40eMBMidbrain0.07
0.07
D5Ertd40eMYMedulla0.45
0.28
D5Ertd40eOLFOlfactory bulb0.55
1.41
D5Ertd40ePPons0.37
0.33
D5Ertd40ePALPallidum0.12
0.17
D5Ertd40eRHPRetrohippocampal region0.46
0.25
D5Ertd40esAMYStriatum-like amygdalar nuclei0.5
0.45
D5Ertd40eSTRStriatum0.1
0.1
D5Ertd40eSTRdStriatum dorsal region0.07
0.09
D5Ertd40eSTRvStriatum ventral region0.09
0.03
D5Ertd40eTHThalamus0.08
0.15
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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