AutismKB 2.0

Annotation Detail for PSIP1


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:PSIP1 ( DFS70,LEDGF,MGC74712,PAIP,PSIP2,p52,p75 )
Gene Full Name: PC4 and SFRS1 interacting protein 1
Band: 9p22.3
Quick LinksEntrez ID:11168; OMIM: 603620; Uniprot ID:PSIP1_HUMAN; ENSEMBL ID: ENSG00000164985; HGNC ID: 9527
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst1 / 6231916
fetus24 / 56401242
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult92 / 193912147
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma1 / 1747557
breast (mammary gland) tumor4 / 9417842
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor15 / 26384556
glioma5 / 10688346
head and neck tumor0 / 1363020 
kidney tumor4 / 6895958
leukemia9 / 9584293
liver tumor4 / 9635941
lung tumor0 / 1031270 
lymphoma3 / 7175541
non-neoplasia10 / 97250102
normal140 / 336030741
ovarian tumor6 / 7668278
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer4 / 10268038
retinoblastoma5 / 46356107
skin tumor11 / 12494988
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood3 / 12347824
bone4 / 7165555
bone marrow8 / 48801163
brain54 / 110098949
cervix1 / 4817120
connective tissue5 / 14925533
ear2 / 16212123
embryonic tissue15 / 21572269
esophagus1 / 2020949
eye11 / 21105452
heart0 / 896260 
intestine10 / 23447242
kidney8 / 21177737
larynx0 / 241450 
liver7 / 20774333
lung7 / 33697420
lymph2 / 4427045
lymph node7 / 9161076
mammary gland4 / 15327126
mouth0 / 670520 
muscle6 / 10771555
nerve2 / 15768126
ovary6 / 10205158
pancreas4 / 21481218
parathyroid3 / 20539146
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta17 / 28082560
prostate5 / 18934526
salivary gland1 / 2015549
skin11 / 21057452
spleen0 / 539520 
stomach0 / 966190 
testis19 / 33044257
thymus8 / 8113198
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus18 / 23287877
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205961_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts674.1
Adipocyte11.7
AdrenalCortex14.75
Adrenalgland10.65
Amygdala123.6
Appendix32.75
AtrioventricularNode19.9
BDCA4+_DentriticCells50.2
Bonemarrow12.4
BronchialEpithelialCells9.55
CD105+_Endothelial148.45
CD14+_Monocytes16.5
CD19+_BCells(neg._sel.)182.75
CD33+_Myeloid18.95
CD34+252.85
CD4+_Tcells305.1
CD56+_NKCells145.25
CD71+_EarlyErythroid152.25
CD8+_Tcells223.1
CardiacMyocytes21.3
Caudatenucleus41.85
Cerebellum12.3
CerebellumPeduncles53.3
CiliaryGanglion19.45
CingulateCortex11.85
Colorectaladenocarcinoma41
DorsalRootGanglion10.1
FetalThyroid12.05
Fetalbrain81.4
Fetalliver38.85
Fetallung22.85
GlobusPallidus38.5
Heart11.65
Hypothalamus71.45
Kidney11.1
Leukemia_chronicMyelogenousK-56216.1
Leukemia_promyelocytic-HL-60101.95
Leukemialymphoblastic(MOLT-4)138.6
Liver11.9
Lung9.7
Lymphnode37.3
Lymphoma_burkitts(Daudi)157.95
Lymphoma_burkitts(Raji)42.7
MedullaOblongata22.65
OccipitalLobe31.95
OlfactoryBulb34.8
Ovary18.5
Pancreas9.4
PancreaticIslet13.8
ParietalLobe18.7
Pituitary88
Placenta8.8
Pons15.6
PrefrontalCortex51.15
Prostate11.75
Salivarygland14.9
SkeletalMuscle14.75
Skin20.6
SmoothMuscle14.6
Spinalcord54.7
SubthalamicNucleus18.35
SuperiorCervicalGanglion44.85
TemporalLobe18.55
Testis9.5
TestisGermCell26.55
TestisIntersitial13.5
TestisLeydigCell13.65
TestisSeminiferousTubule14
Thalamus41.75
Thymus12.15
Thyroid37.9
Tongue11.4
Tonsil44.2
Trachea11.05
TrigeminalGanglion34.35
Uterus61.25
UterusCorpus14.15
WholeBlood63.3
Wholebrain11.1
colon13.3
pineal_day178.46
pineal_night173.72
retina32.075
small_intestine9.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P256384
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.04 ± 0.17
Basal Forebrain7.89 ± 0.15
Basal Part of Pons8.14 ± 0.28
Cerebellar Cortex7.98 ± 0.2
Cerebellar Nuclei7.85 ± 0.18
Claustrum7.9 ± 0.36
Epithalamus7.57 ± 0.32
Frontal Lobe7.87 ± 0.26
Globus Pallidus7.35 ± 0.26
Hypothalamus7.97 ± 0.37
Insula8.06 ± 0.2
Limbic Lobe7.95 ± 0.33
Mesencephalon7.86 ± 0.27
Myelencephalon7.88 ± 0.3
Occipital Lobe8.1 ± 0.22
Parietal Lobe7.99 ± 0.25
Pontine Tegmentum7.87 ± 0.26
Striatum7.74 ± 0.26
Subthalamus8.21 ± 0.27
Temporal Lobe7.92 ± 0.29
Thalamus7.78 ± 0.24
White Matter8.02 ± 0.14
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Psip1CBCerebellum68.31
98.22
Psip1CTXCerebral cortex86.85
74.27
Psip1HIPHippocampal region60.21
100
Psip1HPFHippocampal formation62.84
82.47
Psip1HYHypothalamus50.31
42.02
Psip1LSXLateral septal complex62.63
49.67
Psip1MBMidbrain57.51
54.45
Psip1MYMedulla59.83
64.18
Psip1OLFOlfactory bulb76.02
72.73
Psip1PPons47.72
52.02
Psip1PALPallidum50.35
49.44
Psip1RHPRetrohippocampal region67.46
59.46
Psip1sAMYStriatum-like amygdalar nuclei48.89
38.09
Psip1STRStriatum79.63
64.23
Psip1STRdStriatum dorsal region84.02
68.94
Psip1STRvStriatum ventral region85.61
65.39
Psip1THThalamus52.49
48.95
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00005648 20 199 218 MVKQPCPSESDIITEEDKSK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved