AutismKB 2.0

Annotation Detail for FAM107A


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Basic Information Top
Gene Symbol:FAM107A ( DRR1,FLJ30158,FLJ45473,TU3A )
Gene Full Name: family with sequence similarity 107, member A
Band: 3p14.3-p14.2
Quick LinksEntrez ID:11170; OMIM: 608295; Uniprot ID:F107A_HUMAN; ENSEMBL ID: ENSG00000168309; HGNC ID: 30827
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus68 / 564012120
neonate0 / 310970 
infant4 / 23620169
juvenile1 / 5555617
adult408 / 1939121210
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor11 / 26384541
glioma19 / 106883177
head and neck tumor6 / 13630244
kidney tumor12 / 68959174
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia203 / 972502087
normal1005 / 3360307299
ovarian tumor11 / 76682143
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer2 / 10268019
retinoblastoma3 / 4635664
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites0 / 400150 
bladder1 / 2975733
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain1560 / 11009891416
cervix1 / 4817120
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye51 / 211054241
heart17 / 89626189
intestine4 / 23447217
kidney21 / 21177799
larynx0 / 241450 
liver0 / 2077430 
lung30 / 33697489
lymph0 / 442700 
lymph node0 / 916100 
mammary gland7 / 15327145
mouth0 / 670520 
muscle6 / 10771555
nerve1 / 1576863
ovary14 / 102051137
pancreas4 / 21481218
parathyroid2 / 2053997
pharynx3 / 4132872
pituitary gland3 / 16585180
placenta17 / 28082560
prostate16 / 18934584
salivary gland0 / 201550 
skin0 / 2105740 
spleen16 / 53952296
stomach2 / 9661920
testis3 / 3304429
thymus8 / 8113198
thyroid5 / 47473105
tonsil0 / 169990 
trachea8 / 52413152
umbilical cord2 / 13680146
uterus7 / 23287830
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207547_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.95
Adipocyte6.35
AdrenalCortex5.65
Adrenalgland4.45
Amygdala499.3
Appendix6.6
AtrioventricularNode19.3
BDCA4+_DentriticCells5.05
Bonemarrow5.7
BronchialEpithelialCells4.05
CD105+_Endothelial4.15
CD14+_Monocytes5.85
CD19+_BCells(neg._sel.)4.8
CD33+_Myeloid5.8
CD34+8.05
CD4+_Tcells6.25
CD56+_NKCells4.95
CD71+_EarlyErythroid6.25
CD8+_Tcells4.8
CardiacMyocytes5.8
Caudatenucleus247.05
Cerebellum335.15
CerebellumPeduncles218.3
CiliaryGanglion4.55
CingulateCortex333.3
Colorectaladenocarcinoma4.15
DorsalRootGanglion7.8
FetalThyroid7
Fetalbrain74.55
Fetalliver4.2
Fetallung7.7
GlobusPallidus198.8
Heart10.4
Hypothalamus322.75
Kidney6.05
Leukemia_chronicMyelogenousK-5623.65
Leukemia_promyelocytic-HL-604.85
Leukemialymphoblastic(MOLT-4)4.85
Liver5.45
Lung62.2
Lymphnode5.9
Lymphoma_burkitts(Daudi)6.45
Lymphoma_burkitts(Raji)6.7
MedullaOblongata216.2
OccipitalLobe313.65
OlfactoryBulb82.8
Ovary5.35
Pancreas5
PancreaticIslet6.25
ParietalLobe208.05
Pituitary34.85
Placenta12.65
Pons149.85
PrefrontalCortex3229.9
Prostate7.8
Salivarygland6.8
SkeletalMuscle6.35
Skin5.5
SmoothMuscle5.15
Spinalcord1023.35
SubthalamicNucleus331.55
SuperiorCervicalGanglion7.5
TemporalLobe268.75
Testis4.15
TestisGermCell4.45
TestisIntersitial4.45
TestisLeydigCell6.15
TestisSeminiferousTubule5.1
Thalamus283.9
Thymus10.85
Thyroid8.4
Tongue6.35
Tonsil5.8
Trachea6.9
TrigeminalGanglion6.5
Uterus5.55
UterusCorpus4.7
WholeBlood4.9
Wholebrain227.5
colon4.55
pineal_day324.96
pineal_night45.64
retina667.525
small_intestine4.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P84860
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala12.2 ± 0.45
Basal Forebrain12.31 ± 0.17
Basal Part of Pons11.46 ± 0.4
Cerebellar Cortex11.17 ± 0.31
Cerebellar Nuclei10.25 ± 0.47
Claustrum11.33 ± 0.63
Epithalamus12.42 ± 0.39
Frontal Lobe11.58 ± 0.45
Globus Pallidus11.9 ± 0.53
Hypothalamus11.55 ± 0.57
Insula11.69 ± 0.41
Limbic Lobe11.72 ± 0.5
Mesencephalon11.39 ± 0.45
Myelencephalon11.62 ± 0.48
Occipital Lobe11.5 ± 0.43
Parietal Lobe11.58 ± 0.57
Pontine Tegmentum11.44 ± 0.51
Striatum12.11 ± 0.48
Subthalamus10.82 ± 0.33
Temporal Lobe11.59 ± 0.42
Thalamus11.48 ± 0.3
White Matter11.14 ± 0.47
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
BC055107CBCerebellum21.75
100
BC055107CTXCerebral cortex3.5
2.79
BC055107HIPHippocampal region8.06
14.11
BC055107HPFHippocampal formation5.25
8.56
BC055107HYHypothalamus0.19
0.15
BC055107LSXLateral septal complex10.15
9.39
BC055107MBMidbrain0.56
1.07
BC055107MYMedulla2.87
6.74
BC055107OLFOlfactory bulb2.56
3.45
BC055107PPons0.46
1.53
BC055107PALPallidum0.38
0.27
BC055107RHPRetrohippocampal region0.58
1.03
BC055107sAMYStriatum-like amygdalar nuclei0.89
0.63
BC055107STRStriatum3.12
3.11
BC055107STRdStriatum dorsal region2.45
2.56
BC055107STRvStriatum ventral region3.02
3.22
BC055107THThalamus1.71
2.72
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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