Annotation Detail for DDX20
Basic Information Top
| Gene Symbol: | DDX20 ( DKFZp434H052,DP103,GEMIN3 ) |
|---|---|
| Gene Full Name: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 |
| Band: | 1p13.2 |
| Quick Links | Entrez ID:11218; OMIM: 606168; Uniprot ID:DDX20_HUMAN; ENSEMBL ID: ENSG00000064703; HGNC ID: 2743 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.591405
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 14 / 564012 | 24 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 44 / 1939121 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 7 / 82823 | 84 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 20 / 263845 | 75 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 6 / 71755 | 83 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 106 / 3360307 | 31 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 4 / 123478 | 32 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 36 / 1100989 | 32 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 3 / 211054 | 14 | |
| heart | 2 / 89626 | 22 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 8 / 336974 | 23 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 8 / 91610 | 87 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 4 / 96619 | 41 | |
| testis | 75 / 330442 | 226 |  |
| thymus | 6 / 81131 | 73 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 4 / 51780 | 77 | |
Microarray in - Probe name: CUST_9950_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.53 ± 1.15 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.69 ± 0.53 | |
| Basal Part of Pons | 1.59 ± 1 | |
| Cerebellar Cortex | 2.01 ± 0.99 | |
| Cerebellar Nuclei | 2.11 ± 0.74 | |
| Claustrum | 2.64 ± 1 | |
| Epithalamus | 1.43 ± 0.79 | |
| Frontal Lobe | 1.59 ± 0.77 | |
| Globus Pallidus | 2 ± 0.53 | |
| Hypothalamus | 2 ± 0.29 | |
| Insula | 1.76 ± 0.74 | |
| Limbic Lobe | 2.01 ± 0.88 | |
| Mesencephalon | 1.95 ± 0.97 | |
| Myelencephalon | 1.84 ± 0.86 | |
| Occipital Lobe | 2.05 ± 0.95 | |
| Parietal Lobe | 1.88 ± 1.03 | |
| Pontine Tegmentum | 2.01 ± 0.82 | |
| Striatum | 2.01 ± 1.02 | |
| Subthalamus | 1.53 ± 0.74 | |
| Temporal Lobe | 1.77 ± 0.97 | |
| Thalamus | 1.73 ± 0.86 | |
| White Matter | 1.89 ± 0.52 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ddx20 | CB | Cerebellum | 3.38 | |
| 4.23 | | |||
| Ddx20 | CTX | Cerebral cortex | 3.96 | |
| 3.01 | | |||
| Ddx20 | HIP | Hippocampal region | 4.87 | |
| 4.3 | | |||
| Ddx20 | HPF | Hippocampal formation | 4.44 | |
| 4.1 | | |||
| Ddx20 | HY | Hypothalamus | 0.27 | |
| 0.66 | | |||
| Ddx20 | LSX | Lateral septal complex | 0.35 | |
| 0.22 | | |||
| Ddx20 | MB | Midbrain | 3.14 | |
| 4.16 | | |||
| Ddx20 | MY | Medulla | 1.88 | |
| 2.17 | | |||
| Ddx20 | OLF | Olfactory bulb | 7.04 | |
| 5.42 | | |||
| Ddx20 | P | Pons | 1.12 | |
| 1.18 | | |||
| Ddx20 | PAL | Pallidum | 1.01 | |
| 0.85 | | |||
| Ddx20 | RHP | Retrohippocampal region | 3.66 | |
| 3.33 | | |||
| Ddx20 | sAMY | Striatum-like amygdalar nuclei | 1.52 | |
| 1.03 | | |||
| Ddx20 | STR | Striatum | 1.68 | |
| 1.38 | | |||
| Ddx20 | STRd | Striatum dorsal region | 2.06 | |
| 1.82 | | |||
| Ddx20 | STRv | Striatum ventral region | 1 | |
| 0.62 | | |||
| Ddx20 | TH | Thalamus | 1.64 | |
| 1.93 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| DDX20_HUMAN_72 | 7 | 72 | 78 | PVLEGLR | PRIDE |
| DDX20_HUMAN_85 | 13 | 85 | 97 | PSPVQLKAIPLGR | PRIDE |
| PAp00001911 | 17 | 566 | 582 | EALPVSLPQIPCLSSFK | Peptide Atlas |