Annotation Detail for CHP
Basic Information Top
| Gene Symbol: | CHP ( SLC9A1BP ) |
|---|---|
| Gene Full Name: | - |
| Band: | 15q13.3 |
| Quick Links | Entrez ID:11261; OMIM: 606988; Uniprot ID:CHP1_HUMAN; ENSEMBL ID: ENSG00000187446; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.406234
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 44 / 564012 | 78 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 4 / 55556 | 71 | |
| adult | 139 / 1939121 | 71 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 22 / 94178 | 233 |  |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 11 / 82823 | 132 | |
| colorectal tumor | 11 / 114246 | 96 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 9 / 119369 | 75 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 17 / 106883 | 159 | |
| head and neck tumor | 16 / 136302 | 117 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 7 / 95842 | 73 | |
| liver tumor | 8 / 96359 | 83 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 8 / 97250 | 82 | |
| normal | 168 / 3360307 | 49 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 14 / 102680 | 136 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 13 / 125191 | 103 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 4 / 29757 | 134 | |
| blood | 6 / 123478 | 48 | |
| bone | 14 / 71655 | 195 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 65 / 1100989 | 59 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 4 / 16212 | 246 | |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 6 / 211054 | 28 | |
| heart | 5 / 89626 | 55 | |
| intestine | 22 / 234472 | 93 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 1 / 24145 | 41 | |
| liver | 13 / 207743 | 62 | |
| lung | 13 / 336974 | 38 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 32 / 153271 | 208 | |
| mouth | 14 / 67052 | 208 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 19 / 189345 | 100 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 11 / 210574 | 52 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 11 / 96619 | 113 | |
| testis | 7 / 330442 | 21 | |
| thymus | 8 / 81131 | 98 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 12 / 52413 | 228 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 207993_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 4.8 |  |
| Adipocyte | 3.8 | |
| AdrenalCortex | 4 | |
| Adrenalgland | 3.45 | |
| Amygdala | 4.05 | |
| Appendix | 3.8 | |
| AtrioventricularNode | 2.9 | |
| BDCA4+_DentriticCells | 4.25 | |
| Bonemarrow | 3.75 | |
| BronchialEpithelialCells | 3.8 | |
| CD105+_Endothelial | 3.9 | |
| CD14+_Monocytes | 4.1 | |
| CD19+_BCells(neg._sel.) | 4.1 | |
| CD33+_Myeloid | 6.05 | |
| CD34+ | 4.8 | |
| CD4+_Tcells | 4.2 | |
| CD56+_NKCells | 4.6 | |
| CD71+_EarlyErythroid | 3.55 | |
| CD8+_Tcells | 3.7 | |
| CardiacMyocytes | 4.9 | |
| Caudatenucleus | 3.45 | |
| Cerebellum | 3.1 | |
| CerebellumPeduncles | 4.3 | |
| CiliaryGanglion | 2.7 | |
| CingulateCortex | 3.95 | |
| Colorectaladenocarcinoma | 3.8 | |
| DorsalRootGanglion | 2.9 | |
| FetalThyroid | 3.7 | |
| Fetalbrain | 3.85 | |
| Fetalliver | 3.5 | |
| Fetallung | 3.15 | |
| GlobusPallidus | 2.8 | |
| Heart | 4.8 | |
| Hypothalamus | 4.25 | |
| Kidney | 3.2 | |
| Leukemia_chronicMyelogenousK-562 | 3.45 | |
| Leukemia_promyelocytic-HL-60 | 3.4 | |
| Leukemialymphoblastic(MOLT-4) | 3.1 | |
| Liver | 5.1 | |
| Lung | 4.2 | |
| Lymphnode | 3.35 | |
| Lymphoma_burkitts(Daudi) | 4.9 | |
| Lymphoma_burkitts(Raji) | 5.3 | |
| MedullaOblongata | 3.55 | |
| OccipitalLobe | 3.45 | |
| OlfactoryBulb | 3.05 | |
| Ovary | 2.55 | |
| Pancreas | 3.1 | |
| PancreaticIslet | 4.1 | |
| ParietalLobe | 4.05 | |
| Pituitary | 4.5 | |
| Placenta | 3.95 | |
| Pons | 3.65 | |
| PrefrontalCortex | 4.75 | |
| Prostate | 4.55 | |
| Salivarygland | 3.05 | |
| SkeletalMuscle | 4.45 | |
| Skin | 2.95 | |
| SmoothMuscle | 4.35 | |
| Spinalcord | 4.15 | |
| SubthalamicNucleus | 3.5 | |
| SuperiorCervicalGanglion | 4.25 | |
| TemporalLobe | 3.5 | |
| Testis | 3.3 | |
| TestisGermCell | 3.25 | |
| TestisIntersitial | 3.25 | |
| TestisLeydigCell | 3.75 | |
| TestisSeminiferousTubule | 3.3 | |
| Thalamus | 3.9 | |
| Thymus | 3.05 | |
| Thyroid | 4.75 | |
| Tongue | 3.75 | |
| Tonsil | 4.15 | |
| Trachea | 3.2 | |
| TrigeminalGanglion | 3.85 | |
| Uterus | 3.1 | |
| UterusCorpus | 3.35 | |
| WholeBlood | 4.3 | |
| Wholebrain | 3.35 | |
| colon | 11.2 | |
| pineal_day | 4.76 | |
| pineal_night | 4.66 | |
| retina | 4.625 | |
| small_intestine | 3.75 | |
- Probe name: A_23_P100111
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.41 ± 0.42 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.32 ± 0.3 | |
| Basal Part of Pons | 6.79 ± 0.21 | |
| Cerebellar Cortex | 6.24 ± 0.33 | |
| Cerebellar Nuclei | 6.87 ± 0.28 | |
| Claustrum | 6.68 ± 0.42 | |
| Epithalamus | 5.94 ± 0.33 | |
| Frontal Lobe | 6.5 ± 0.42 | |
| Globus Pallidus | 6.33 ± 0.43 | |
| Hypothalamus | 6.49 ± 0.41 | |
| Insula | 6.47 ± 0.23 | |
| Limbic Lobe | 6.68 ± 0.43 | |
| Mesencephalon | 6.53 ± 0.4 | |
| Myelencephalon | 6.4 ± 0.47 | |
| Occipital Lobe | 6.37 ± 0.31 | |
| Parietal Lobe | 6.59 ± 0.47 | |
| Pontine Tegmentum | 6.42 ± 0.49 | |
| Striatum | 5.58 ± 0.53 | |
| Subthalamus | 6.64 ± 0.53 | |
| Temporal Lobe | 6.54 ± 0.31 | |
| Thalamus | 6.35 ± 0.38 | |
| White Matter | 6.24 ± 0.16 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 1500003O03Rik | CB | Cerebellum | 33.14 | |
| 44.54 | | |||
| 1500003O03Rik | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| 1500003O03Rik | HIP | Hippocampal region | 59.81 | |
| 100 | | |||
| 1500003O03Rik | HPF | Hippocampal formation | 77.87 | |
| 100 | | |||
| 1500003O03Rik | HY | Hypothalamus | 77.9 | |
| 79.27 | | |||
| 1500003O03Rik | LSX | Lateral septal complex | 66.72 | |
| 61.06 | | |||
| 1500003O03Rik | MB | Midbrain | 71.89 | |
| 82.88 | | |||
| 1500003O03Rik | MY | Medulla | 82.59 | |
| 100 | | |||
| 1500003O03Rik | OLF | Olfactory bulb | 72.92 | |
| 73.72 | | |||
| 1500003O03Rik | P | Pons | 74.09 | |
| 100 | | |||
| 1500003O03Rik | PAL | Pallidum | 70.87 | |
| 82.19 | | |||
| 1500003O03Rik | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| 1500003O03Rik | sAMY | Striatum-like amygdalar nuclei | 68.7 | |
| 64.61 | | |||
| 1500003O03Rik | STR | Striatum | 38.48 | |
| 33.62 | | |||
| 1500003O03Rik | STRd | Striatum dorsal region | 30.36 | |
| 26.73 | | |||
| 1500003O03Rik | STRv | Striatum ventral region | 40.69 | |
| 31.14 | | |||
| 1500003O03Rik | TH | Thalamus | 66.71 | |
| 71.63 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| CHP1_HUMAN_0 | 0 | 0 | 0 | IINAFFPEGEDQVNFR | PRIDE |
| CHP1_HUMAN_0 | 0 | 0 | 0 | TLAHFRPIEDNEK | PRIDE |
| CHP1_HUMAN_111 | 9 | 111 | 119 | SNKLHFAFR | PRIDE |
| CHP1_HUMAN_129 | 11 | 129 | 139 | ISRDELLQVLR | PRIDE |
| CHP1_HUMAN_140 | 18 | 140 | 157 | MMVGVNISDEQLGSIADR | PRIDE |
| CHP1_HUMAN_53 | 12 | 53 | 64 | IPELAINPLGDR | PRIDE |
| CHP1_HUMAN_85 | 13 | 85 | 97 | TLAHFRPIEDNEK | PRIDE |
| PAp00034874 | 16 | 66 | 81 | IINAFFPEGEDQVNFR | Peptide Atlas |