AutismKB 2.0

Annotation Detail for CCDC101


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Basic Information Top
Gene Symbol:CCDC101 ( FLJ32446,SGF29,STAF36 )
Gene Full Name: coiled-coil domain containing 101
Band: 16p11.2
Quick LinksEntrez ID:112869; OMIM: 613374; Uniprot ID:SGF29_HUMAN; ENSEMBL ID: ENSG00000176476; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus13 / 56401223
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult64 / 193912133
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor7 / 11424661
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor2 / 2638457
glioma5 / 10688346
head and neck tumor1 / 1363027
kidney tumor1 / 6895914
leukemia1 / 9584210
liver tumor1 / 9635910
lung tumor3 / 10312729
lymphoma4 / 7175555
non-neoplasia2 / 9725020
normal77 / 336030722
ovarian tumor2 / 7668226
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer1 / 1026809
retinoblastoma3 / 4635664
skin tumor9 / 12494972
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood2 / 12347816
bone1 / 7165513
bone marrow1 / 4880120
brain23 / 110098920
cervix2 / 4817141
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye13 / 21105461
heart6 / 8962666
intestine9 / 23447238
kidney5 / 21177723
larynx1 / 2414541
liver1 / 2077434
lung6 / 33697417
lymph0 / 442700 
lymph node1 / 9161010
mammary gland2 / 15327113
mouth0 / 670520 
muscle6 / 10771555
nerve0 / 157680 
ovary2 / 10205119
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta3 / 28082510
prostate2 / 18934510
salivary gland0 / 201550 
skin9 / 21057442
spleen4 / 5395274
stomach1 / 9661910
testis11 / 33044233
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 48117_at
Cell line Expression level Expression bar
721_B_lymphoblasts11.15
Adipocyte12.35
AdrenalCortex11.7
Adrenalgland8.35
Amygdala8.7
Appendix10.95
AtrioventricularNode8.65
BDCA4+_DentriticCells16.5
Bonemarrow20.65
BronchialEpithelialCells9.6
CD105+_Endothelial13.45
CD14+_Monocytes20.25
CD19+_BCells(neg._sel.)17.45
CD33+_Myeloid14.9
CD34+15.35
CD4+_Tcells28.3
CD56+_NKCells14.2
CD71+_EarlyErythroid25.1
CD8+_Tcells16.85
CardiacMyocytes14.55
Caudatenucleus7.75
Cerebellum7.95
CerebellumPeduncles16.6
CiliaryGanglion9.3
CingulateCortex8.9
Colorectaladenocarcinoma9.25
DorsalRootGanglion7.95
FetalThyroid11.55
Fetalbrain9.85
Fetalliver7.15
Fetallung7.65
GlobusPallidus7.05
Heart38.65
Hypothalamus8.5
Kidney7.25
Leukemia_chronicMyelogenousK-56210.95
Leukemia_promyelocytic-HL-608.1
Leukemialymphoblastic(MOLT-4)7.6
Liver52.5
Lung32.1
Lymphnode9.7
Lymphoma_burkitts(Daudi)12.75
Lymphoma_burkitts(Raji)21.95
MedullaOblongata8.35
OccipitalLobe8.25
OlfactoryBulb7.05
Ovary6.6
Pancreas9
PancreaticIslet13
ParietalLobe10.65
Pituitary11.15
Placenta9.25
Pons11.9
PrefrontalCortex11.3
Prostate24.7
Salivarygland7.1
SkeletalMuscle22.15
Skin7.65
SmoothMuscle11.2
Spinalcord12.05
SubthalamicNucleus9.45
SuperiorCervicalGanglion10.4
TemporalLobe11.3
Testis11.9
TestisGermCell14.9
TestisIntersitial13.45
TestisLeydigCell13.6
TestisSeminiferousTubule22
Thalamus9.5
Thymus7.7
Thyroid17.05
Tongue10.25
Tonsil9.25
Trachea8.65
TrigeminalGanglion9.75
Uterus10.05
UterusCorpus9.35
WholeBlood20.3
Wholebrain7.65
colon8.9
pineal_day11.44
pineal_night12.58
retina11.825
small_intestine8.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8776_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.43 ± 0.65
Basal Forebrain3.87 ± 0.5
Basal Part of Pons3.96 ± 0.49
Cerebellar Cortex4.76 ± 0.33
Cerebellar Nuclei4.07 ± 0.72
Claustrum4.19 ± 0.78
Epithalamus4.31 ± 0.45
Frontal Lobe4.05 ± 0.59
Globus Pallidus4.38 ± 0.97
Hypothalamus3.9 ± 0.88
Insula3.9 ± 0.62
Limbic Lobe4.08 ± 0.74
Mesencephalon4.01 ± 0.79
Myelencephalon4.04 ± 0.68
Occipital Lobe3.8 ± 0.57
Parietal Lobe4.14 ± 0.84
Pontine Tegmentum4.3 ± 0.83
Striatum3.79 ± 0.67
Subthalamus3.94 ± 0.78
Temporal Lobe4.06 ± 0.63
Thalamus4.05 ± 0.65
White Matter4.81 ± 0.45
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009188 12 68 79 ADAEAECNILRK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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