Annotation Detail for FAM54A
Basic Information Top
| Gene Symbol: | FAM54A ( DUFD1 ) |
|---|---|
| Gene Full Name: | family with sequence similarity 54, member A |
| Band: | 6q23.3 |
| Quick Links | Entrez ID:113115; OMIM: NA; Uniprot ID:FA54A_HUMAN; ENSEMBL ID: ENSG00000146410; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.121536
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 8 / 564012 | 14 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 19 / 1939121 | 9 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 25 / 3360307 | 7 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 5 / 1100989 | 4 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 7 / 149255 | 46 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 13 / 330442 | 39 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P253752
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.91 ± 1.03 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.44 ± 0.2 | |
| Basal Part of Pons | 1.04 ± 0.34 | |
| Cerebellar Cortex | 1.64 ± 0.69 | |
| Cerebellar Nuclei | 1.85 ± 0.69 | |
| Claustrum | 2.36 ± 0.84 | |
| Epithalamus | 1.61 ± 0.68 | |
| Frontal Lobe | 1.51 ± 0.66 | |
| Globus Pallidus | 2.17 ± 0.59 | |
| Hypothalamus | 1.63 ± 0.65 | |
| Insula | 1.47 ± 0.61 | |
| Limbic Lobe | 1.51 ± 0.61 | |
| Mesencephalon | 1.8 ± 0.78 | |
| Myelencephalon | 1.63 ± 0.6 | |
| Occipital Lobe | 1.74 ± 0.82 | |
| Parietal Lobe | 1.68 ± 0.77 | |
| Pontine Tegmentum | 1.75 ± 0.67 | |
| Striatum | 1.51 ± 0.44 | |
| Subthalamus | 1.68 ± 0.61 | |
| Temporal Lobe | 1.43 ± 0.65 | |
| Thalamus | 1.7 ± 0.61 | |
| White Matter | 1.82 ± 0.15 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2610016C23Rik | CB | Cerebellum | 1.08 | |
| 1.29 | | |||
| 2610016C23Rik | CTX | Cerebral cortex | 3.91 | |
| 2.92 | | |||
| 2610016C23Rik | HIP | Hippocampal region | 5.35 | |
| 4.68 | | |||
| 2610016C23Rik | HPF | Hippocampal formation | 3.93 | |
| 3.22 | | |||
| 2610016C23Rik | HY | Hypothalamus | 0.61 | |
| 0.55 | | |||
| 2610016C23Rik | LSX | Lateral septal complex | 0.44 | |
| 0.33 | | |||
| 2610016C23Rik | MB | Midbrain | 0.45 | |
| 0.58 | | |||
| 2610016C23Rik | MY | Medulla | 0.84 | |
| 1.5 | | |||
| 2610016C23Rik | OLF | Olfactory bulb | 6.62 | |
| 6.97 | | |||
| 2610016C23Rik | P | Pons | 3.59 | |
| 5.49 | | |||
| 2610016C23Rik | PAL | Pallidum | 0.81 | |
| 0.66 | | |||
| 2610016C23Rik | RHP | Retrohippocampal region | 1.71 | |
| 1.33 | | |||
| 2610016C23Rik | sAMY | Striatum-like amygdalar nuclei | 0.45 | |
| 0.28 | | |||
| 2610016C23Rik | STR | Striatum | 1.3 | |
| 0.93 | | |||
| 2610016C23Rik | STRd | Striatum dorsal region | 1.21 | |
| 0.87 | | |||
| 2610016C23Rik | STRv | Striatum ventral region | 2.42 | |
| 1.59 | | |||
| 2610016C23Rik | TH | Thalamus | 1.54 | |
| 1.26 | |