Annotation Detail for SLC46A1
Basic Information Top
| Gene Symbol: | SLC46A1 ( FLJ39875,HCP1,MGC9564,PCFT ) |
|---|---|
| Gene Full Name: | solute carrier family 46 (folate transporter), member 1 |
| Band: | 17q11.2 |
| Quick Links | Entrez ID:113235; OMIM: 611672; Uniprot ID:PCFT_HUMAN; ENSEMBL ID: ENSG00000076351; HGNC ID: 30521 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.446689
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 59 / 1939121 | 30 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 1 / 17290 | 57 |  |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 11 / 106883 | 102 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 85 / 3360307 | 25 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 7 / 102680 | 68 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 43 / 1100989 | 39 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 7 / 211054 | 33 | |
| heart | 1 / 89626 | 11 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 4 / 96619 | 41 | |
| testis | 2 / 330442 | 6 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P335069
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.56 ± 0.43 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.44 ± 0.33 | |
| Basal Part of Pons | 6.43 ± 0.32 | |
| Cerebellar Cortex | 6.67 ± 0.26 | |
| Cerebellar Nuclei | 6.63 ± 0.32 | |
| Claustrum | 6.76 ± 0.47 | |
| Epithalamus | 6.52 ± 0.34 | |
| Frontal Lobe | 6.32 ± 0.39 | |
| Globus Pallidus | 7.15 ± 0.5 | |
| Hypothalamus | 5.93 ± 0.39 | |
| Insula | 6.35 ± 0.36 | |
| Limbic Lobe | 6.72 ± 0.69 | |
| Mesencephalon | 6.53 ± 0.41 | |
| Myelencephalon | 6.62 ± 0.53 | |
| Occipital Lobe | 7 ± 0.58 | |
| Parietal Lobe | 6.52 ± 0.51 | |
| Pontine Tegmentum | 6.57 ± 0.5 | |
| Striatum | 7.23 ± 0.61 | |
| Subthalamus | 6.48 ± 0.21 | |
| Temporal Lobe | 6.41 ± 0.43 | |
| Thalamus | 6.56 ± 0.36 | |
| White Matter | 7.51 ± 0.53 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| D11Ertd18e | CB | Cerebellum | 0 | |
| 0 | | |||
| D11Ertd18e | CTX | Cerebral cortex | 0 | |
| 0 | | |||
| D11Ertd18e | HIP | Hippocampal region | 0 | |
| 0 | | |||
| D11Ertd18e | HPF | Hippocampal formation | 0 | |
| 0 | | |||
| D11Ertd18e | HY | Hypothalamus | 0 | |
| 0 | | |||
| D11Ertd18e | LSX | Lateral septal complex | 0 | |
| 0 | | |||
| D11Ertd18e | MB | Midbrain | 0 | |
| 0 | | |||
| D11Ertd18e | MY | Medulla | 0 | |
| 0 | | |||
| D11Ertd18e | OLF | Olfactory bulb | 0 | |
| 0 | | |||
| D11Ertd18e | P | Pons | 0 | |
| 0 | | |||
| D11Ertd18e | PAL | Pallidum | 0 | |
| 0 | | |||
| D11Ertd18e | RHP | Retrohippocampal region | 0 | |
| 0 | | |||
| D11Ertd18e | sAMY | Striatum-like amygdalar nuclei | 0 | |
| 0 | | |||
| D11Ertd18e | STR | Striatum | 0 | |
| 0 | | |||
| D11Ertd18e | STRd | Striatum dorsal region | 0 | |
| 0 | | |||
| D11Ertd18e | STRv | Striatum ventral region | 0 | |
| 0 | | |||
| D11Ertd18e | TH | Thalamus | 0 | |
| 0 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00039516 | 10 | 13 | 22 | ARPAAAVLCR | Peptide Atlas |