Annotation Detail for DDX42


Gene Symbol: | DDX42 ( FLJ43179,RHELP,RNAHP,SF3b125 ) |
---|---|
Gene Full Name: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 |
Band: | 17q23.3 |
Quick Links | Entrez ID:11325; OMIM: 613369; Uniprot ID:DDX42_HUMAN; ENSEMBL ID: ENSG00000198231; HGNC ID: 18676 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.702010
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
embryoid body | 14 / 70761 | 197 | ![]() |
blastocyst | 19 / 62319 | 304 | ![]() |
fetus | 44 / 564012 | 78 | ![]() |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 4 / 55556 | 71 | ![]() |
adult | 160 / 1939121 | 82 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adrenal tumor | 1 / 12794 | 78 | ![]() |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 8 / 94178 | 84 | ![]() |
cervical tumor | 2 / 34366 | 58 | ![]() |
chondrosarcoma | 6 / 82823 | 72 | ![]() |
colorectal tumor | 11 / 114246 | 96 | ![]() |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 6 / 119369 | 50 | ![]() |
germ cell tumor | 17 / 263845 | 64 | ![]() |
glioma | 7 / 106883 | 65 | ![]() |
head and neck tumor | 15 / 136302 | 110 | ![]() |
kidney tumor | 3 / 68959 | 43 | ![]() |
leukemia | 0 / 95842 | 0 | |
liver tumor | 8 / 96359 | 83 | ![]() |
lung tumor | 7 / 103127 | 67 | ![]() |
lymphoma | 2 / 71755 | 27 | ![]() |
non-neoplasia | 6 / 97250 | 61 | ![]() |
normal | 247 / 3360307 | 73 | ![]() |
ovarian tumor | 9 / 76682 | 117 | ![]() |
pancreatic tumor | 8 / 104616 | 76 | ![]() |
primitive neuroectodermal tumor of the CNS | 11 / 125680 | 87 | ![]() |
prostate cancer | 18 / 102680 | 175 | ![]() |
retinoblastoma | 4 / 46356 | 86 | ![]() |
skin tumor | 30 / 124949 | 240 | ![]() |
soft tissue/muscle tissue tumor | 9 / 125191 | 71 | ![]() |
uterine tumor | 9 / 90257 | 99 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adipose tissue | 1 / 13106 | 76 | ![]() |
adrenal gland | 2 / 33197 | 60 | ![]() |
ascites | 3 / 40015 | 74 | ![]() |
bladder | 2 / 29757 | 67 | ![]() |
blood | 3 / 123478 | 24 | ![]() |
bone | 8 / 71655 | 111 | ![]() |
bone marrow | 0 / 48801 | 0 | |
brain | 66 / 1100989 | 59 | ![]() |
cervix | 2 / 48171 | 41 | ![]() |
connective tissue | 5 / 149255 | 33 | ![]() |
ear | 1 / 16212 | 61 | ![]() |
embryonic tissue | 37 / 215722 | 171 | ![]() |
esophagus | 0 / 20209 | 0 | |
eye | 13 / 211054 | 61 | ![]() |
heart | 6 / 89626 | 66 | ![]() |
intestine | 25 / 234472 | 106 | ![]() |
kidney | 7 / 211777 | 33 | ![]() |
larynx | 2 / 24145 | 82 | ![]() |
liver | 12 / 207743 | 57 | ![]() |
lung | 25 / 336974 | 74 | ![]() |
lymph | 1 / 44270 | 22 | ![]() |
lymph node | 7 / 91610 | 76 | ![]() |
mammary gland | 19 / 153271 | 123 | ![]() |
mouth | 9 / 67052 | 134 | ![]() |
muscle | 10 / 107715 | 92 | ![]() |
nerve | 0 / 15768 | 0 | |
ovary | 8 / 102051 | 78 | ![]() |
pancreas | 9 / 214812 | 41 | ![]() |
parathyroid | 3 / 20539 | 146 | ![]() |
pharynx | 2 / 41328 | 48 | ![]() |
pituitary gland | 1 / 16585 | 60 | ![]() |
placenta | 26 / 280825 | 92 | ![]() |
prostate | 21 / 189345 | 110 | ![]() |
salivary gland | 0 / 20155 | 0 | |
skin | 45 / 210574 | 213 | ![]() |
spleen | 2 / 53952 | 37 | ![]() |
stomach | 3 / 96619 | 31 | ![]() |
testis | 20 / 330442 | 60 | ![]() |
thymus | 7 / 81131 | 86 | ![]() |
thyroid | 7 / 47473 | 147 | ![]() |
tonsil | 3 / 16999 | 176 | ![]() |
trachea | 11 / 52413 | 209 | ![]() |
umbilical cord | 0 / 13680 | 0 | |
uterus | 30 / 232878 | 128 | ![]() |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 201788_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 224.2 | ![]() |
Adipocyte | 91.2 | ![]() |
AdrenalCortex | 82.05 | ![]() |
Adrenalgland | 73.15 | ![]() |
Amygdala | 110.1 | ![]() |
Appendix | 114.35 | ![]() |
AtrioventricularNode | 91.2 | ![]() |
BDCA4+_DentriticCells | 247.65 | ![]() |
Bonemarrow | 78 | ![]() |
BronchialEpithelialCells | 93.15 | ![]() |
CD105+_Endothelial | 177.15 | ![]() |
CD14+_Monocytes | 122.45 | ![]() |
CD19+_BCells(neg._sel.) | 215.15 | ![]() |
CD33+_Myeloid | 194.35 | ![]() |
CD34+ | 386.35 | ![]() |
CD4+_Tcells | 228.9 | ![]() |
CD56+_NKCells | 252.2 | ![]() |
CD71+_EarlyErythroid | 57.25 | ![]() |
CD8+_Tcells | 236.1 | ![]() |
CardiacMyocytes | 79.9 | ![]() |
Caudatenucleus | 89.75 | ![]() |
Cerebellum | 82.2 | ![]() |
CerebellumPeduncles | 131.25 | ![]() |
CiliaryGanglion | 78.85 | ![]() |
CingulateCortex | 131.9 | ![]() |
Colorectaladenocarcinoma | 162 | ![]() |
DorsalRootGanglion | 84.65 | ![]() |
FetalThyroid | 97 | ![]() |
Fetalbrain | 94.65 | ![]() |
Fetalliver | 56.1 | ![]() |
Fetallung | 89.45 | ![]() |
GlobusPallidus | 69.75 | ![]() |
Heart | 36 | ![]() |
Hypothalamus | 172.95 | ![]() |
Kidney | 70.65 | ![]() |
Leukemia_chronicMyelogenousK-562 | 91.85 | ![]() |
Leukemia_promyelocytic-HL-60 | 75.1 | ![]() |
Leukemialymphoblastic(MOLT-4) | 116.85 | ![]() |
Liver | 81.05 | ![]() |
Lung | 73.45 | ![]() |
Lymphnode | 121.8 | ![]() |
Lymphoma_burkitts(Daudi) | 151.15 | ![]() |
Lymphoma_burkitts(Raji) | 68.05 | ![]() |
MedullaOblongata | 107.1 | ![]() |
OccipitalLobe | 102.05 | ![]() |
OlfactoryBulb | 87.1 | ![]() |
Ovary | 67.05 | ![]() |
Pancreas | 85 | ![]() |
PancreaticIslet | 112.55 | ![]() |
ParietalLobe | 111 | ![]() |
Pituitary | 152.05 | ![]() |
Placenta | 115.95 | ![]() |
Pons | 102.65 | ![]() |
PrefrontalCortex | 176.75 | ![]() |
Prostate | 117.6 | ![]() |
Salivarygland | 81.65 | ![]() |
SkeletalMuscle | 132.7 | ![]() |
Skin | 56.25 | ![]() |
SmoothMuscle | 102.3 | ![]() |
Spinalcord | 128.35 | ![]() |
SubthalamicNucleus | 111.1 | ![]() |
SuperiorCervicalGanglion | 94.6 | ![]() |
TemporalLobe | 84.5 | ![]() |
Testis | 89.1 | ![]() |
TestisGermCell | 124.35 | ![]() |
TestisIntersitial | 85.05 | ![]() |
TestisLeydigCell | 102.55 | ![]() |
TestisSeminiferousTubule | 96.6 | ![]() |
Thalamus | 132.7 | ![]() |
Thymus | 78.75 | ![]() |
Thyroid | 143.3 | ![]() |
Tongue | 96.3 | ![]() |
Tonsil | 110 | ![]() |
Trachea | 79.8 | ![]() |
TrigeminalGanglion | 114.35 | ![]() |
Uterus | 102.8 | ![]() |
UterusCorpus | 89.4 | ![]() |
WholeBlood | 109 | ![]() |
Wholebrain | 75.65 | ![]() |
colon | 103.05 | ![]() |
pineal_day | 143.62 | ![]() |
pineal_night | 121.98 | ![]() |
retina | 167.6 | ![]() |
small_intestine | 94.95 | ![]() |
- Probe name: A_24_P142531
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 7.53 ± 0.27 | ![]() ![]() ![]() |
Basal Forebrain | 7.72 ± 0.08 | ![]() ![]() ![]() |
Basal Part of Pons | 7.72 ± 0.22 | ![]() ![]() ![]() |
Cerebellar Cortex | 7.67 ± 0.23 | ![]() ![]() ![]() |
Cerebellar Nuclei | 7.75 ± 0.22 | ![]() ![]() ![]() |
Claustrum | 7.54 ± 0.33 | ![]() ![]() ![]() |
Epithalamus | 7.97 ± 0.32 | ![]() ![]() ![]() |
Frontal Lobe | 7.7 ± 0.25 | ![]() ![]() ![]() |
Globus Pallidus | 7.97 ± 0.22 | ![]() ![]() ![]() |
Hypothalamus | 7.78 ± 0.16 | ![]() ![]() ![]() |
Insula | 7.73 ± 0.18 | ![]() ![]() ![]() |
Limbic Lobe | 7.67 ± 0.23 | ![]() ![]() ![]() |
Mesencephalon | 7.73 ± 0.21 | ![]() ![]() ![]() |
Myelencephalon | 7.68 ± 0.26 | ![]() ![]() ![]() |
Occipital Lobe | 7.69 ± 0.22 | ![]() ![]() ![]() |
Parietal Lobe | 7.81 ± 0.23 | ![]() ![]() ![]() |
Pontine Tegmentum | 7.75 ± 0.28 | ![]() ![]() ![]() |
Striatum | 7.77 ± 0.26 | ![]() ![]() ![]() |
Subthalamus | 7.85 ± 0.28 | ![]() ![]() ![]() |
Temporal Lobe | 7.71 ± 0.22 | ![]() ![]() ![]() |
Thalamus | 7.7 ± 0.24 | ![]() ![]() ![]() |
White Matter | 7.81 ± 0.14 | ![]() ![]() ![]() |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Ddx42 | CB | Cerebellum | 30.19 | ![]() |
39.14 | ![]() | |||
Ddx42 | CTX | Cerebral cortex | 83.93 | ![]() |
70.01 | ![]() | |||
Ddx42 | HIP | Hippocampal region | 55.73 | ![]() |
92.1 | ![]() | |||
Ddx42 | HPF | Hippocampal formation | 63.6 | ![]() |
80.05 | ![]() | |||
Ddx42 | HY | Hypothalamus | 30.29 | ![]() |
24.53 | ![]() | |||
Ddx42 | LSX | Lateral septal complex | 34.21 | ![]() |
24.49 | ![]() | |||
Ddx42 | MB | Midbrain | 33.84 | ![]() |
32.32 | ![]() | |||
Ddx42 | MY | Medulla | 42.14 | ![]() |
47.35 | ![]() | |||
Ddx42 | OLF | Olfactory bulb | 66.59 | ![]() |
59.82 | ![]() | |||
Ddx42 | P | Pons | 33.86 | ![]() |
37.81 | ![]() | |||
Ddx42 | PAL | Pallidum | 28.93 | ![]() |
27.65 | ![]() | |||
Ddx42 | RHP | Retrohippocampal region | 76.47 | ![]() |
67.43 | ![]() | |||
Ddx42 | sAMY | Striatum-like amygdalar nuclei | 35.01 | ![]() |
28.44 | ![]() | |||
Ddx42 | STR | Striatum | 47.28 | ![]() |
36.8 | ![]() | |||
Ddx42 | STRd | Striatum dorsal region | 49.22 | ![]() |
39.01 | ![]() | |||
Ddx42 | STRv | Striatum ventral region | 51.58 | ![]() |
38.11 | ![]() | |||
Ddx42 | TH | Thalamus | 43.54 | ![]() |
40.7 | ![]() |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00004575 | 22 | 270 | 291 | KSEYTQPTPIQCQGVPVALSGR | Peptide Atlas |