Annotation Detail for GLCCI1
Basic Information Top
| Gene Symbol: | GLCCI1 ( FAM117C,GIG18,TSSN1 ) |
|---|---|
| Gene Full Name: | glucocorticoid induced transcript 1 |
| Band: | 7p21.3 |
| Quick Links | Entrez ID:113263; OMIM: NA; Uniprot ID:GLCI1_HUMAN; ENSEMBL ID: ENSG00000106415; HGNC ID: 18713 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.131673
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 33 / 564012 | 58 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 49 / 1939121 | 25 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 7 / 95842 | 73 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 132 / 3360307 | 39 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 3 / 29757 | 100 | |
| blood | 5 / 123478 | 40 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 24 / 1100989 | 21 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 11 / 211054 | 52 | |
| heart | 5 / 89626 | 55 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 12 / 336974 | 35 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 19 / 91610 | 207 |  |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 1 / 96619 | 10 | |
| testis | 22 / 330442 | 66 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P336198
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.1 ± 0.63 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.14 ± 0.52 | |
| Basal Part of Pons | 8.58 ± 0.46 | |
| Cerebellar Cortex | 8.48 ± 0.19 | |
| Cerebellar Nuclei | 8.16 ± 0.32 | |
| Claustrum | 7.7 ± 0.52 | |
| Epithalamus | 7.68 ± 0.48 | |
| Frontal Lobe | 7.98 ± 0.43 | |
| Globus Pallidus | 6.83 ± 0.19 | |
| Hypothalamus | 8.23 ± 0.51 | |
| Insula | 7.92 ± 0.5 | |
| Limbic Lobe | 7.76 ± 0.56 | |
| Mesencephalon | 7.79 ± 0.45 | |
| Myelencephalon | 7.91 ± 0.5 | |
| Occipital Lobe | 8.58 ± 0.41 | |
| Parietal Lobe | 8.19 ± 0.51 | |
| Pontine Tegmentum | 7.96 ± 0.44 | |
| Striatum | 7.62 ± 0.54 | |
| Subthalamus | 7.87 ± 0.67 | |
| Temporal Lobe | 7.97 ± 0.48 | |
| Thalamus | 7.76 ± 0.38 | |
| White Matter | 7.08 ± 0.18 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Glcci1 | CB | Cerebellum | 23.17 | |
| 26.35 | | |||
| Glcci1 | CTX | Cerebral cortex | 48.25 | |
| 38.07 | | |||
| Glcci1 | HIP | Hippocampal region | 16.52 | |
| 26.17 | | |||
| Glcci1 | HPF | Hippocampal formation | 19.67 | |
| 23.4 | | |||
| Glcci1 | HY | Hypothalamus | 2.52 | |
| 2.07 | | |||
| Glcci1 | LSX | Lateral septal complex | 6.92 | |
| 5.27 | | |||
| Glcci1 | MB | Midbrain | 5.07 | |
| 5.51 | | |||
| Glcci1 | MY | Medulla | 17.4 | |
| 22.1 | | |||
| Glcci1 | OLF | Olfactory bulb | 23.41 | |
| 18.79 | | |||
| Glcci1 | P | Pons | 17.21 | |
| 20.86 | | |||
| Glcci1 | PAL | Pallidum | 5.86 | |
| 5.51 | | |||
| Glcci1 | RHP | Retrohippocampal region | 23.75 | |
| 20.23 | | |||
| Glcci1 | sAMY | Striatum-like amygdalar nuclei | 6.8 | |
| 5.46 | | |||
| Glcci1 | STR | Striatum | 44.65 | |
| 34.86 | | |||
| Glcci1 | STRd | Striatum dorsal region | 55.45 | |
| 42.08 | | |||
| Glcci1 | STRv | Striatum ventral region | 44.19 | |
| 38.3 | | |||
| Glcci1 | TH | Thalamus | 6.44 | |
| 8.23 | |