AutismKB 2.0

Annotation Detail for TUBA3D


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:TUBA3D ( H2-ALPHA,TUBA3C )
Gene Full Name: tubulin, alpha 3d
Band: 2q21.1
Quick LinksEntrez ID:113457; OMIM: NA; Uniprot ID:TBA3C_HUMAN; ENSEMBL ID: ENSG00000075886; HGNC ID: 24071
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult8 / 19391214
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor2 / 2638457
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal27 / 33603078
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain3 / 11009892
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart4 / 8962644
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis39 / 330442118
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210527_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts700.3
Adipocyte78.75
AdrenalCortex98.55
Adrenalgland78.2
Amygdala165.25
Appendix64.45
AtrioventricularNode72.3
BDCA4+_DentriticCells84.55
Bonemarrow95.2
BronchialEpithelialCells98.2
CD105+_Endothelial129
CD14+_Monocytes94.8
CD19+_BCells(neg._sel.)71.7
CD33+_Myeloid79.55
CD34+120
CD4+_Tcells62.55
CD56+_NKCells54.45
CD71+_EarlyErythroid161.3
CD8+_Tcells59.85
CardiacMyocytes130.15
Caudatenucleus88.1
Cerebellum91.55
CerebellumPeduncles135.8
CiliaryGanglion68.8
CingulateCortex120.3
Colorectaladenocarcinoma121.25
DorsalRootGanglion78.55
FetalThyroid87.6
Fetalbrain114.45
Fetalliver79.95
Fetallung75.3
GlobusPallidus71.05
Heart145.85
Hypothalamus124.5
Kidney76.55
Leukemia_chronicMyelogenousK-562113.9
Leukemia_promyelocytic-HL-60106
Leukemialymphoblastic(MOLT-4)82.15
Liver92.75
Lung102.5
Lymphnode72.95
Lymphoma_burkitts(Daudi)200.1
Lymphoma_burkitts(Raji)138.6
MedullaOblongata117.5
OccipitalLobe137.8
OlfactoryBulb75.95
Ovary63.65
Pancreas73
PancreaticIslet77.85
ParietalLobe136.55
Pituitary97.1
Placenta99.95
Pons126.8
PrefrontalCortex125.5
Prostate92.9
Salivarygland62.6
SkeletalMuscle108.2
Skin73.2
SmoothMuscle136
Spinalcord153.45
SubthalamicNucleus88.25
SuperiorCervicalGanglion106.55
TemporalLobe187.65
Testis1209.8
TestisGermCell878.5
TestisIntersitial1402.85
TestisLeydigCell947.45
TestisSeminiferousTubule758.6
Thalamus205.05
Thymus79.35
Thyroid76.3
Tongue94.5
Tonsil91.8
Trachea64.8
TrigeminalGanglion96.3
Uterus75.05
UterusCorpus75.1
WholeBlood92.5
Wholebrain87.4
colon63.95
pineal_day171.92
pineal_night142.18
retina117.375
small_intestine76.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_4619_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.64 ± 0.72
Basal Forebrain7.88 ± 0.3
Basal Part of Pons8.79 ± 0.49
Cerebellar Cortex8.3 ± 0.47
Cerebellar Nuclei8.24 ± 0.34
Claustrum7.86 ± 0.54
Epithalamus8.36 ± 0.49
Frontal Lobe8.51 ± 0.51
Globus Pallidus7.7 ± 0.45
Hypothalamus8.92 ± 0.47
Insula8.51 ± 0.43
Limbic Lobe8.04 ± 0.7
Mesencephalon8.01 ± 0.62
Myelencephalon8.11 ± 0.71
Occipital Lobe7.35 ± 0.75
Parietal Lobe8.11 ± 0.56
Pontine Tegmentum8.11 ± 0.55
Striatum6.94 ± 0.53
Subthalamus8.42 ± 0.44
Temporal Lobe8.4 ± 0.54
Thalamus8.09 ± 0.5
White Matter8.65 ± 0.45
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tuba3CBCerebellum76.29
100
Tuba3CTXCerebral cortex100
100
Tuba3HIPHippocampal region100
100
Tuba3HPFHippocampal formation100
100
Tuba3HYHypothalamus100
100
Tuba3LSXLateral septal complex100
100
Tuba3MBMidbrain100
100
Tuba3MYMedulla100
100
Tuba3OLFOlfactory bulb100
100
Tuba3PPons100
100
Tuba3PALPallidum100
100
Tuba3RHPRetrohippocampal region100
100
Tuba3sAMYStriatum-like amygdalar nuclei100
100
Tuba3STRStriatum100
100
Tuba3STRdStriatum dorsal region100
100
Tuba3STRvStriatum ventral region100
100
Tuba3THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000326 20 403 422 AFVHWYVGEGMEEGEFSEAR Peptide Atlas
TBA3C_HUMAN_230 14 230 243 LIGQIVSSITASLR PRIDE
TBA3C_HUMAN_322 18 322 339 DVVPKDVNAAIATIKTKR PRIDE
TBA3C_HUMAN_340 13 340 352 TIQFVDWCPTGFK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved