Annotation Detail for C1orf59
Basic Information Top
| Gene Symbol: | C1orf59 ( FLJ30525,HEN1,MGC111091 ) |
|---|---|
| Gene Full Name: | chromosome 1 open reading frame 59 |
| Band: | 1p13.3 |
| Quick Links | Entrez ID:113802; OMIM: 612178; Uniprot ID:CA059_HUMAN; ENSEMBL ID: ENSG00000162639; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.7962
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 15 / 564012 | 26 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 36 / 1939121 | 18 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 4 / 34366 | 116 |  |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 17 / 263845 | 64 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 99 / 3360307 | 29 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 8 / 124949 | 64 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 38 / 1100989 | 34 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 1 / 336974 | 2 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 8 / 210574 | 37 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 3 / 96619 | 31 | |
| testis | 47 / 330442 | 142 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P309361
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.84 ± 0.26 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.9 ± 0.22 | |
| Basal Part of Pons | 9.13 ± 0.3 | |
| Cerebellar Cortex | 8.33 ± 0.22 | |
| Cerebellar Nuclei | 8.88 ± 0.2 | |
| Claustrum | 8.83 ± 0.21 | |
| Epithalamus | 8.15 ± 0.68 | |
| Frontal Lobe | 8.85 ± 0.33 | |
| Globus Pallidus | 8.44 ± 0.54 | |
| Hypothalamus | 9.32 ± 0.32 | |
| Insula | 9 ± 0.42 | |
| Limbic Lobe | 8.75 ± 0.36 | |
| Mesencephalon | 8.85 ± 0.35 | |
| Myelencephalon | 8.75 ± 0.44 | |
| Occipital Lobe | 8.41 ± 0.4 | |
| Parietal Lobe | 8.85 ± 0.36 | |
| Pontine Tegmentum | 8.8 ± 0.45 | |
| Striatum | 8.85 ± 0.48 | |
| Subthalamus | 9.57 ± 0.16 | |
| Temporal Lobe | 8.9 ± 0.29 | |
| Thalamus | 8.5 ± 0.31 | |
| White Matter | 8.41 ± 0.44 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4921515J06Rik | CB | Cerebellum | 3.6 | |
| 4.07 | | |||
| 4921515J06Rik | CTX | Cerebral cortex | 3.23 | |
| 2.38 | | |||
| 4921515J06Rik | HIP | Hippocampal region | 5.38 | |
| 5.43 | | |||
| 4921515J06Rik | HPF | Hippocampal formation | 4.34 | |
| 3.93 | | |||
| 4921515J06Rik | HY | Hypothalamus | 0.6 | |
| 0.49 | | |||
| 4921515J06Rik | LSX | Lateral septal complex | 0.75 | |
| 0.63 | | |||
| 4921515J06Rik | MB | Midbrain | 1.13 | |
| 1 | | |||
| 4921515J06Rik | MY | Medulla | 1.41 | |
| 1.68 | | |||
| 4921515J06Rik | OLF | Olfactory bulb | 6.73 | |
| 4.69 | | |||
| 4921515J06Rik | P | Pons | 1.2 | |
| 1.46 | | |||
| 4921515J06Rik | PAL | Pallidum | 1.48 | |
| 1.21 | | |||
| 4921515J06Rik | RHP | Retrohippocampal region | 2.59 | |
| 1.85 | | |||
| 4921515J06Rik | sAMY | Striatum-like amygdalar nuclei | 5.74 | |
| 3.53 | | |||
| 4921515J06Rik | STR | Striatum | 1.13 | |
| 0.73 | | |||
| 4921515J06Rik | STRd | Striatum dorsal region | 0.48 | |
| 0.32 | | |||
| 4921515J06Rik | STRv | Striatum ventral region | 1.14 | |
| 0.68 | | |||
| 4921515J06Rik | TH | Thalamus | 4.52 | |
| 3.58 | |