Annotation Detail for LACTB
Basic Information Top
| Gene Symbol: | LACTB ( FLJ14902,G24,MRPL56 ) |
|---|---|
| Gene Full Name: | lactamase, beta |
| Band: | 15q22.2 |
| Quick Links | Entrez ID:114294; OMIM: 608440; Uniprot ID:LACTB_HUMAN; ENSEMBL ID: ENSG00000103642; HGNC ID: 16468 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.410388
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 55 / 1939121 | 28 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 6 / 96359 | 62 |  |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 78 / 3360307 | 23 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 6 / 1100989 | 5 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 8 / 207743 | 38 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 11 / 280825 | 39 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 8 / 210574 | 37 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 1 / 96619 | 10 | |
| testis | 4 / 330442 | 12 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_6060_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.84 ± 0.33 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.36 ± 0.36 | |
| Basal Part of Pons | 3.89 ± 0.43 | |
| Cerebellar Cortex | 4.17 ± 0.38 | |
| Cerebellar Nuclei | 4.27 ± 0.62 | |
| Claustrum | 4.66 ± 0.57 | |
| Epithalamus | 3.94 ± 0.67 | |
| Frontal Lobe | 4.37 ± 0.47 | |
| Globus Pallidus | 4.31 ± 0.65 | |
| Hypothalamus | 4.42 ± 0.41 | |
| Insula | 4.48 ± 0.28 | |
| Limbic Lobe | 4.68 ± 0.45 | |
| Mesencephalon | 4.46 ± 0.42 | |
| Myelencephalon | 4.42 ± 0.49 | |
| Occipital Lobe | 4.4 ± 0.48 | |
| Parietal Lobe | 4.34 ± 0.45 | |
| Pontine Tegmentum | 4.54 ± 0.45 | |
| Striatum | 5 ± 0.38 | |
| Subthalamus | 4.38 ± 0.76 | |
| Temporal Lobe | 4.42 ± 0.47 | |
| Thalamus | 4.35 ± 0.5 | |
| White Matter | 4.18 ± 0.56 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lactb | CB | Cerebellum | 4.08 | |
| 3.95 | | |||
| Lactb | CTX | Cerebral cortex | 8.82 | |
| 5.72 | | |||
| Lactb | HIP | Hippocampal region | 8.98 | |
| 7.99 | | |||
| Lactb | HPF | Hippocampal formation | 10.3 | |
| 8.49 | | |||
| Lactb | HY | Hypothalamus | 0.49 | |
| 0.39 | | |||
| Lactb | LSX | Lateral septal complex | 0.98 | |
| 1.23 | | |||
| Lactb | MB | Midbrain | 0.7 | |
| 0.71 | | |||
| Lactb | MY | Medulla | 1.9 | |
| 1.81 | | |||
| Lactb | OLF | Olfactory bulb | 9.65 | |
| 7 | | |||
| Lactb | P | Pons | 1.06 | |
| 1.14 | | |||
| Lactb | PAL | Pallidum | 0.7 | |
| 0.46 | | |||
| Lactb | RHP | Retrohippocampal region | 13.87 | |
| 10.2 | | |||
| Lactb | sAMY | Striatum-like amygdalar nuclei | 0.59 | |
| 0.38 | | |||
| Lactb | STR | Striatum | 2.66 | |
| 1.71 | | |||
| Lactb | STRd | Striatum dorsal region | 3.42 | |
| 2.1 | | |||
| Lactb | STRv | Striatum ventral region | 2.08 | |
| 1.24 | | |||
| Lactb | TH | Thalamus | 0.86 | |
| 0.54 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| LACTB_HUMAN_350 | 22 | 350 | 371 | IFHDLDMLTTVQEENEPVIYNR | PRIDE |
| LACTB_HUMAN_410 | 15 | 410 | 424 | FGNAMLYGYQVGLFK | PRIDE |
| PAp00133241 | 31 | 481 | 511 | HYASHTGGAVGASSVLLVLPEELDTETINNK | Peptide Atlas |