Annotation Detail for CYGB
Basic Information Top
| Gene Symbol: | CYGB ( HGB,STAP ) |
|---|---|
| Gene Full Name: | cytoglobin |
| Band: | 17q25.1 |
| Quick Links | Entrez ID:114757; OMIM: 608759; Uniprot ID:CYGB_HUMAN; ENSEMBL ID: ENSG00000161544; HGNC ID: 16505 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.95120
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 15 / 564012 | 26 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 |  |
| adult | 39 / 1939121 | 20 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 64 / 3360307 | 19 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 23 / 125680 | 183 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 18 / 1100989 | 16 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 6 / 89626 | 66 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_9012_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.27 ± 0.71 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.08 ± 0.59 | |
| Basal Part of Pons | 2.93 ± 0.66 | |
| Cerebellar Cortex | 3.08 ± 0.64 | |
| Cerebellar Nuclei | 3.56 ± 0.55 | |
| Claustrum | 3.49 ± 0.7 | |
| Epithalamus | 2.65 ± 0.54 | |
| Frontal Lobe | 2.7 ± 0.77 | |
| Globus Pallidus | 3.19 ± 0.47 | |
| Hypothalamus | 2.56 ± 0.62 | |
| Insula | 2.56 ± 0.53 | |
| Limbic Lobe | 2.82 ± 0.71 | |
| Mesencephalon | 3 ± 0.7 | |
| Myelencephalon | 2.91 ± 0.79 | |
| Occipital Lobe | 2.76 ± 0.79 | |
| Parietal Lobe | 2.91 ± 0.8 | |
| Pontine Tegmentum | 2.75 ± 0.82 | |
| Striatum | 3.25 ± 1.01 | |
| Subthalamus | 2.9 ± 0.79 | |
| Temporal Lobe | 2.79 ± 0.64 | |
| Thalamus | 2.71 ± 0.87 | |
| White Matter | 2.66 ± 0.67 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cygb | CB | Cerebellum | 69.5 | |
| 100 | | |||
| Cygb | CTX | Cerebral cortex | 73.72 | |
| 74.04 | | |||
| Cygb | HIP | Hippocampal region | 92.74 | |
| 100 | | |||
| Cygb | HPF | Hippocampal formation | 85.99 | |
| 100 | | |||
| Cygb | HY | Hypothalamus | 95.72 | |
| 100 | | |||
| Cygb | LSX | Lateral septal complex | 42.27 | |
| 38.62 | | |||
| Cygb | MB | Midbrain | 100 | |
| 100 | | |||
| Cygb | MY | Medulla | 100 | |
| 100 | | |||
| Cygb | OLF | Olfactory bulb | 81.41 | |
| 95.02 | | |||
| Cygb | P | Pons | 100 | |
| 100 | | |||
| Cygb | PAL | Pallidum | 79.65 | |
| 100 | | |||
| Cygb | RHP | Retrohippocampal region | 76.02 | |
| 93.37 | | |||
| Cygb | sAMY | Striatum-like amygdalar nuclei | 91.48 | |
| 100 | | |||
| Cygb | STR | Striatum | 43.98 | |
| 49.65 | | |||
| Cygb | STRd | Striatum dorsal region | 32.57 | |
| 37.85 | | |||
| Cygb | STRv | Striatum ventral region | 52.94 | |
| 55.75 | | |||
| Cygb | TH | Thalamus | 42.24 | |
| 65.3 | |