AutismKB 2.0

Annotation Detail for TUBGCP5


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:TUBGCP5 ( GCP5,KIAA1899 )
Gene Full Name: tubulin, gamma complex associated protein 5
Band: 15q11.2
Quick LinksEntrez ID:114791; OMIM: 608147; Uniprot ID:GCP5_HUMAN; ENSEMBL ID: ENSG00000153575; HGNC ID: 18600
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst3 / 6231948
fetus16 / 56401228
neonate1 / 3109732
infant0 / 236200 
juvenile2 / 5555635
adult41 / 193912121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma3 / 8282336
colorectal tumor2 / 11424617
esophageal tumor1 / 1729057
gastrointestinal tumor0 / 1193690 
germ cell tumor12 / 26384545
glioma1 / 1068839
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor2 / 9635920
lung tumor1 / 1031279
lymphoma2 / 7175527
non-neoplasia7 / 9725071
normal98 / 336030729
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder1 / 2975733
blood0 / 1234780 
bone4 / 7165555
bone marrow0 / 488010 
brain43 / 110098939
cervix5 / 48171103
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus1 / 2020949
eye1 / 2110544
heart2 / 8962622
intestine2 / 2344728
kidney1 / 2117774
larynx0 / 241450 
liver6 / 20774328
lung4 / 33697411
lymph0 / 442700 
lymph node3 / 9161032
mammary gland2 / 15327113
mouth2 / 6705229
muscle8 / 10771574
nerve0 / 157680 
ovary0 / 1020510 
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta5 / 28082517
prostate2 / 18934510
salivary gland0 / 201550 
skin1 / 2105744
spleen1 / 5395218
stomach1 / 9661910
testis21 / 33044263
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord1 / 1368073
uterus11 / 23287847
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214876_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts9.6
Adipocyte8.35
AdrenalCortex12.8
Adrenalgland7.85
Amygdala8.75
Appendix14.6
AtrioventricularNode11.15
BDCA4+_DentriticCells8.65
Bonemarrow10.25
BronchialEpithelialCells7.2
CD105+_Endothelial8.75
CD14+_Monocytes9.2
CD19+_BCells(neg._sel.)8.8
CD33+_Myeloid11.05
CD34+11.7
CD4+_Tcells9.5
CD56+_NKCells8.45
CD71+_EarlyErythroid8.45
CD8+_Tcells15.05
CardiacMyocytes25.25
Caudatenucleus7.7
Cerebellum7
CerebellumPeduncles11.35
CiliaryGanglion11.85
CingulateCortex9.35
Colorectaladenocarcinoma8.85
DorsalRootGanglion8.75
FetalThyroid9
Fetalbrain8
Fetalliver7.45
Fetallung6.45
GlobusPallidus8.15
Heart19.2
Hypothalamus10.05
Kidney8.45
Leukemia_chronicMyelogenousK-5627.3
Leukemia_promyelocytic-HL-607.55
Leukemialymphoblastic(MOLT-4)9.6
Liver14.65
Lung9.2
Lymphnode7.2
Lymphoma_burkitts(Daudi)12.65
Lymphoma_burkitts(Raji)14.9
MedullaOblongata7.3
OccipitalLobe7.15
OlfactoryBulb6.65
Ovary10.65
Pancreas8.85
PancreaticIslet11.9
ParietalLobe12.35
Pituitary10.65
Placenta7.7
Pons9
PrefrontalCortex14.5
Prostate9.2
Salivarygland7.4
SkeletalMuscle15.55
Skin10.65
SmoothMuscle11.3
Spinalcord8.75
SubthalamicNucleus8.4
SuperiorCervicalGanglion15.05
TemporalLobe8.1
Testis7.3
TestisGermCell11.6
TestisIntersitial9.8
TestisLeydigCell10.35
TestisSeminiferousTubule7.15
Thalamus9.1
Thymus5.8
Thyroid9.8
Tongue11.1
Tonsil8.95
Trachea7
TrigeminalGanglion14.7
Uterus6.8
UterusCorpus9.5
WholeBlood8.95
Wholebrain5.85
colon8.45
pineal_day11.6
pineal_night10.62
retina10.05
small_intestine7.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P152038
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.14 ± 0.46
Basal Forebrain5.32 ± 0.31
Basal Part of Pons5.89 ± 0.16
Cerebellar Cortex5.52 ± 0.31
Cerebellar Nuclei5.61 ± 0.49
Claustrum4.99 ± 0.61
Epithalamus5.5 ± 0.42
Frontal Lobe5.53 ± 0.35
Globus Pallidus5.58 ± 0.43
Hypothalamus5.72 ± 0.34
Insula5.48 ± 0.18
Limbic Lobe5.35 ± 0.43
Mesencephalon5.4 ± 0.44
Myelencephalon5.39 ± 0.45
Occipital Lobe5.27 ± 0.42
Parietal Lobe5.6 ± 0.35
Pontine Tegmentum5.34 ± 0.48
Striatum5.02 ± 0.39
Subthalamus5.65 ± 0.48
Temporal Lobe5.45 ± 0.34
Thalamus5.49 ± 0.37
White Matter6 ± 0.37
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Tubgcp5CBCerebellum23.63
33.41
Tubgcp5CTXCerebral cortex71.76
59.14
Tubgcp5HIPHippocampal region43.84
63.39
Tubgcp5HPFHippocampal formation46.26
55.25
Tubgcp5HYHypothalamus37.73
31.19
Tubgcp5LSXLateral septal complex43.23
35.12
Tubgcp5MBMidbrain26.61
29.87
Tubgcp5MYMedulla16.83
26.37
Tubgcp5OLFOlfactory bulb55.09
52.22
Tubgcp5PPons20.64
29.16
Tubgcp5PALPallidum38.71
38.03
Tubgcp5RHPRetrohippocampal region51.47
45.72
Tubgcp5sAMYStriatum-like amygdalar nuclei40.56
30.83
Tubgcp5STRStriatum43.67
33.42
Tubgcp5STRdStriatum dorsal region43.36
32.87
Tubgcp5STRvStriatum ventral region46.75
36.11
Tubgcp5THThalamus56.15
51.4
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
GCP5_HUMAN_644 9 644 652 PLLAINFAR PRIDE
PAp00497761 17 606 622 HGEDSTPQVLTEQQATK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved