Annotation Detail for MYSM1
Basic Information Top
| Gene Symbol: | MYSM1 ( 2A-DUB,2ADUB,DKFZp779J1554,DKFZp779J1721,KIAA1915,RP4-592A1.1 ) |
|---|---|
| Gene Full Name: | Myb-like, SWIRM and MPN domains 1 |
| Band: | 1p32.1 |
| Quick Links | Entrez ID:114803; OMIM: 612176; Uniprot ID:MYSM1_HUMAN; ENSEMBL ID: ENSG00000162601; HGNC ID: 29401 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.477495
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 18 / 564012 | 31 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 62 / 1939121 | 31 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 8 / 95842 | 83 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 105 / 3360307 | 31 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 20 / 102680 | 194 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 7 / 123478 | 56 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 29 / 1100989 | 26 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 8 / 336974 | 23 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 8 / 107715 | 74 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 3 / 41328 | 72 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 20 / 189345 | 105 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 2 / 330442 | 6 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_1322_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.88 ± 0.29 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.5 ± 0.07 | |
| Basal Part of Pons | 7.61 ± 0.36 | |
| Cerebellar Cortex | 7.5 ± 0.36 | |
| Cerebellar Nuclei | 7.71 ± 0.26 | |
| Claustrum | 8.02 ± 0.38 | |
| Epithalamus | 7.47 ± 0.82 | |
| Frontal Lobe | 7.53 ± 0.33 | |
| Globus Pallidus | 7.54 ± 0.13 | |
| Hypothalamus | 7.29 ± 0.22 | |
| Insula | 7.41 ± 0.36 | |
| Limbic Lobe | 7.75 ± 0.44 | |
| Mesencephalon | 7.58 ± 0.38 | |
| Myelencephalon | 7.58 ± 0.3 | |
| Occipital Lobe | 8.01 ± 0.34 | |
| Parietal Lobe | 7.76 ± 0.32 | |
| Pontine Tegmentum | 7.58 ± 0.37 | |
| Striatum | 7.48 ± 0.41 | |
| Subthalamus | 7.58 ± 0.21 | |
| Temporal Lobe | 7.59 ± 0.33 | |
| Thalamus | 7.51 ± 0.26 | |
| White Matter | 8.35 ± 0.36 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Mysm1 | CB | Cerebellum | 1.24 | |
| 2.18 | | |||
| Mysm1 | CTX | Cerebral cortex | 3.61 | |
| 2.71 | | |||
| Mysm1 | HIP | Hippocampal region | 5.25 | |
| 4.58 | | |||
| Mysm1 | HPF | Hippocampal formation | 3.65 | |
| 3.11 | | |||
| Mysm1 | HY | Hypothalamus | 0.09 | |
| 0.07 | | |||
| Mysm1 | LSX | Lateral septal complex | 0.37 | |
| 0.37 | | |||
| Mysm1 | MB | Midbrain | 0.54 | |
| 0.72 | | |||
| Mysm1 | MY | Medulla | 0.71 | |
| 0.8 | | |||
| Mysm1 | OLF | Olfactory bulb | 3.44 | |
| 2.36 | | |||
| Mysm1 | P | Pons | 0.43 | |
| 0.6 | | |||
| Mysm1 | PAL | Pallidum | 0.11 | |
| 0.1 | | |||
| Mysm1 | RHP | Retrohippocampal region | 1.31 | |
| 1.25 | | |||
| Mysm1 | sAMY | Striatum-like amygdalar nuclei | 0.13 | |
| 0.19 | | |||
| Mysm1 | STR | Striatum | 0.26 | |
| 0.29 | | |||
| Mysm1 | STRd | Striatum dorsal region | 0.2 | |
| 0.28 | | |||
| Mysm1 | STRv | Striatum ventral region | 0.46 | |
| 0.32 | | |||
| Mysm1 | TH | Thalamus | 0.89 | |
| 0.8 | |