Annotation Detail for PTPMT1
Basic Information Top
| Gene Symbol: | PTPMT1 ( DUSP23,FLJ46081,MOSP,PLIP ) |
|---|---|
| Gene Full Name: | protein tyrosine phosphatase, mitochondrial 1 |
| Band: | 11p11.2 |
| Quick Links | Entrez ID:114971; OMIM: 609538; Uniprot ID:PTPM1_HUMAN; ENSEMBL ID: ENSG00000110536; HGNC ID: 26965 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.728160
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 12 / 564012 | 21 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 68 / 1939121 | 35 | |
| embryoid body | 1 / 70761 | 14 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 5 / 564012 | 8 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 23 / 1939121 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 |  |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 92 / 3360307 | 27 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 4 / 90257 | 44 | |
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 47 / 3360307 | 13 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 33 / 1100989 | 29 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 11 / 189345 | 58 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 17 / 330442 | 51 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 1 / 51780 | 19 | |
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 12 / 1100989 | 10 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 5 / 211054 | 23 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 11 / 330442 | 33 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P372562
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.13 ± 0.16 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.24 ± 0.09 | |
| Basal Part of Pons | 8.91 ± 0.15 | |
| Cerebellar Cortex | 9.15 ± 0.17 | |
| Cerebellar Nuclei | 9.28 ± 0.3 | |
| Claustrum | 9.11 ± 0.33 | |
| Epithalamus | 9.68 ± 0.2 | |
| Frontal Lobe | 9.16 ± 0.23 | |
| Globus Pallidus | 9.81 ± 0.14 | |
| Hypothalamus | 9.47 ± 0.18 | |
| Insula | 9.13 ± 0.22 | |
| Limbic Lobe | 8.97 ± 0.22 | |
| Mesencephalon | 9.29 ± 0.22 | |
| Myelencephalon | 9.2 ± 0.24 | |
| Occipital Lobe | 9.26 ± 0.21 | |
| Parietal Lobe | 9.28 ± 0.25 | |
| Pontine Tegmentum | 9.3 ± 0.21 | |
| Striatum | 9.3 ± 0.2 | |
| Subthalamus | 9.29 ± 0.1 | |
| Temporal Lobe | 9.12 ± 0.25 | |
| Thalamus | 9.29 ± 0.17 | |
| White Matter | 9.09 ± 0.17 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ptpmt1 | CB | Cerebellum | 1.7 | |
| 3.02 | | |||
| Ptpmt1 | CTX | Cerebral cortex | 1.4 | |
| 1.99 | | |||
| Ptpmt1 | HIP | Hippocampal region | 0.94 | |
| 1.46 | | |||
| Ptpmt1 | HPF | Hippocampal formation | 0.77 | |
| 1.25 | | |||
| Ptpmt1 | HY | Hypothalamus | 0.08 | |
| 0.08 | | |||
| Ptpmt1 | LSX | Lateral septal complex | 0.32 | |
| 0.57 | | |||
| Ptpmt1 | MB | Midbrain | 0.52 | |
| 1.04 | | |||
| Ptpmt1 | MY | Medulla | 6.19 | |
| 8.64 | | |||
| Ptpmt1 | OLF | Olfactory bulb | 0.43 | |
| 0.64 | | |||
| Ptpmt1 | P | Pons | 0.41 | |
| 0.75 | | |||
| Ptpmt1 | PAL | Pallidum | 0.22 | |
| 0.33 | | |||
| Ptpmt1 | RHP | Retrohippocampal region | 0.54 | |
| 1.02 | | |||
| Ptpmt1 | sAMY | Striatum-like amygdalar nuclei | 0.47 | |
| 1.23 | | |||
| Ptpmt1 | STR | Striatum | 1.26 | |
| 1.58 | | |||
| Ptpmt1 | STRd | Striatum dorsal region | 1.69 | |
| 2.18 | | |||
| Ptpmt1 | STRv | Striatum ventral region | 0.53 | |
| 0.31 | | |||
| Ptpmt1 | TH | Thalamus | 4.44 | |
| 6.22 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00495937 | 13 | 41 | 53 | IDPTVLLGALPLR | Peptide Atlas |