Annotation Detail for VASN
Basic Information Top
| Gene Symbol: | VASN ( SLITL2 ) |
|---|---|
| Gene Full Name: | vasorin |
| Band: | 16p13.3 |
| Quick Links | Entrez ID:114990; OMIM: 608843; Uniprot ID:VASN_HUMAN; ENSEMBL ID: ENSG00000168140; HGNC ID: 18517 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.372579
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 17 / 564012 | 30 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 78 / 1939121 | 40 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 17 / 82823 | 205 |  |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 101 / 3360307 | 30 | |
| ovarian tumor | 7 / 76682 | 91 |  |
| pancreatic tumor | 11 / 104616 | 105 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 7 / 71655 | 97 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 15 / 1100989 | 13 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 13 / 149255 | 87 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 19 / 211054 | 90 | |
| heart | 1 / 89626 | 11 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 19 / 336974 | 56 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 9 / 102051 | 88 | |
| pancreas | 14 / 214812 | 65 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 23 / 280825 | 81 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 4 / 330442 | 12 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_1447_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.9 ± 0.4 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.71 ± 0.34 | |
| Basal Part of Pons | 5.63 ± 0.45 | |
| Cerebellar Cortex | 5.36 ± 0.32 | |
| Cerebellar Nuclei | 5.92 ± 0.37 | |
| Claustrum | 6.29 ± 0.57 | |
| Epithalamus | 5.2 ± 0.53 | |
| Frontal Lobe | 5.71 ± 0.51 | |
| Globus Pallidus | 6.13 ± 0.4 | |
| Hypothalamus | 5.62 ± 0.44 | |
| Insula | 5.52 ± 0.54 | |
| Limbic Lobe | 5.84 ± 0.61 | |
| Mesencephalon | 5.79 ± 0.51 | |
| Myelencephalon | 5.82 ± 0.56 | |
| Occipital Lobe | 5.82 ± 0.46 | |
| Parietal Lobe | 5.73 ± 0.5 | |
| Pontine Tegmentum | 5.69 ± 0.49 | |
| Striatum | 6.04 ± 0.53 | |
| Subthalamus | 5.6 ± 0.43 | |
| Temporal Lobe | 5.73 ± 0.55 | |
| Thalamus | 5.82 ± 0.46 | |
| White Matter | 5.77 ± 0.23 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Vasn | CB | Cerebellum | 66.41 | |
| 95.14 | | |||
| Vasn | CTX | Cerebral cortex | 39.58 | |
| 26.33 | | |||
| Vasn | HIP | Hippocampal region | 23.03 | |
| 25.51 | | |||
| Vasn | HPF | Hippocampal formation | 23.29 | |
| 22.25 | | |||
| Vasn | HY | Hypothalamus | 7.31 | |
| 5.69 | | |||
| Vasn | LSX | Lateral septal complex | 8.56 | |
| 6.3 | | |||
| Vasn | MB | Midbrain | 6.8 | |
| 6.72 | | |||
| Vasn | MY | Medulla | 13.6 | |
| 13.42 | | |||
| Vasn | OLF | Olfactory bulb | 39.52 | |
| 32.86 | | |||
| Vasn | P | Pons | 10.76 | |
| 10.97 | | |||
| Vasn | PAL | Pallidum | 11.67 | |
| 8.93 | | |||
| Vasn | RHP | Retrohippocampal region | 23.84 | |
| 18.01 | | |||
| Vasn | sAMY | Striatum-like amygdalar nuclei | 30.18 | |
| 20.12 | | |||
| Vasn | STR | Striatum | 18.29 | |
| 13.07 | | |||
| Vasn | STRd | Striatum dorsal region | 16.22 | |
| 11.63 | | |||
| Vasn | STRv | Striatum ventral region | 22.06 | |
| 15.9 | | |||
| Vasn | TH | Thalamus | 10.32 | |
| 10.31 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00026498 | 10 | 112 | 121 | LHEITNETFR | Peptide Atlas |