Annotation Detail for KCTD12
Basic Information Top
Gene Symbol: | KCTD12 ( C13orf2,FLJ33073,KIAA1778,PFET1,PFETIN ) |
---|---|
Gene Full Name: | potassium channel tetramerisation domain containing 12 |
Band: | 13q22.3 |
Quick Links | Entrez ID:115207; OMIM: 610521; Uniprot ID:KCD12_HUMAN; ENSEMBL ID: ENSG00000178695; HGNC ID: 14678 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.644125
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 9 / 70761 | 127 | |
blastocyst | 0 / 62319 | 0 | |
fetus | 200 / 564012 | 354 | |
neonate | 0 / 31097 | 0 | |
infant | 1 / 23620 | 42 | |
juvenile | 2 / 55556 | 35 | |
adult | 123 / 1939121 | 63 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 0 / 94178 | 0 | |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 6 / 82823 | 72 | |
colorectal tumor | 2 / 114246 | 17 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 4 / 119369 | 33 | |
germ cell tumor | 1 / 263845 | 3 | |
glioma | 5 / 106883 | 46 | |
head and neck tumor | 12 / 136302 | 88 | |
kidney tumor | 3 / 68959 | 43 | |
leukemia | 3 / 95842 | 31 | |
liver tumor | 2 / 96359 | 20 | |
lung tumor | 1 / 103127 | 9 | |
lymphoma | 2 / 71755 | 27 | |
non-neoplasia | 6 / 97250 | 61 | |
normal | 427 / 3360307 | 127 | |
ovarian tumor | 16 / 76682 | 208 | |
pancreatic tumor | 0 / 104616 | 0 | |
primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
prostate cancer | 2 / 102680 | 19 | |
retinoblastoma | 1 / 46356 | 21 | |
skin tumor | 0 / 124949 | 0 | |
soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
uterine tumor | 8 / 90257 | 88 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 3 / 13106 | 228 | |
adrenal gland | 2 / 33197 | 60 | |
ascites | 0 / 40015 | 0 | |
bladder | 0 / 29757 | 0 | |
blood | 6 / 123478 | 48 | |
bone | 2 / 71655 | 27 | |
bone marrow | 2 / 48801 | 40 | |
brain | 69 / 1100989 | 62 | |
cervix | 2 / 48171 | 41 | |
connective tissue | 12 / 149255 | 80 | |
ear | 114 / 16212 | 7031 | |
embryonic tissue | 37 / 215722 | 171 | |
esophagus | 0 / 20209 | 0 | |
eye | 15 / 211054 | 71 | |
heart | 10 / 89626 | 111 | |
intestine | 8 / 234472 | 34 | |
kidney | 19 / 211777 | 89 | |
larynx | 1 / 24145 | 41 | |
liver | 3 / 207743 | 14 | |
lung | 27 / 336974 | 80 | |
lymph | 0 / 44270 | 0 | |
lymph node | 1 / 91610 | 10 | |
mammary gland | 3 / 153271 | 19 | |
mouth | 5 / 67052 | 74 | |
muscle | 8 / 107715 | 74 | |
nerve | 4 / 15768 | 253 | |
ovary | 17 / 102051 | 166 | |
pancreas | 13 / 214812 | 60 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 2 / 41328 | 48 | |
pituitary gland | 1 / 16585 | 60 | |
placenta | 41 / 280825 | 145 | |
prostate | 4 / 189345 | 21 | |
salivary gland | 0 / 20155 | 0 | |
skin | 1 / 210574 | 4 | |
spleen | 4 / 53952 | 74 | |
stomach | 4 / 96619 | 41 | |
testis | 8 / 330442 | 24 | |
thymus | 1 / 81131 | 12 | |
thyroid | 8 / 47473 | 168 | |
tonsil | 0 / 16999 | 0 | |
trachea | 5 / 52413 | 95 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 17 / 232878 | 72 | |
vascular | 15 / 51780 | 289 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 212192_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 8 | |
Adipocyte | 77.95 | |
AdrenalCortex | 18.9 | |
Adrenalgland | 40.85 | |
Amygdala | 455.3 | |
Appendix | 337.5 | |
AtrioventricularNode | 41.1 | |
BDCA4+_DentriticCells | 645.1 | |
Bonemarrow | 26.05 | |
BronchialEpithelialCells | 317.7 | |
CD105+_Endothelial | 36.15 | |
CD14+_Monocytes | 1424 | |
CD19+_BCells(neg._sel.) | 10.1 | |
CD33+_Myeloid | 2036.9 | |
CD34+ | 77.7 | |
CD4+_Tcells | 7.8 | |
CD56+_NKCells | 24.1 | |
CD71+_EarlyErythroid | 9.25 | |
CD8+_Tcells | 7.05 | |
CardiacMyocytes | 173.65 | |
Caudatenucleus | 172.8 | |
Cerebellum | 272.5 | |
CerebellumPeduncles | 155.95 | |
CiliaryGanglion | 69 | |
CingulateCortex | 24.6 | |
Colorectaladenocarcinoma | 7.4 | |
DorsalRootGanglion | 232.55 | |
FetalThyroid | 37.7 | |
Fetalbrain | 1278.5 | |
Fetalliver | 20.65 | |
Fetallung | 583.4 | |
GlobusPallidus | 20.4 | |
Heart | 22.2 | |
Hypothalamus | 352.05 | |
Kidney | 23.7 | |
Leukemia_chronicMyelogenousK-562 | 7.6 | |
Leukemia_promyelocytic-HL-60 | 6.15 | |
Leukemialymphoblastic(MOLT-4) | 6.25 | |
Liver | 10.35 | |
Lung | 47.4 | |
Lymphnode | 451.05 | |
Lymphoma_burkitts(Daudi) | 9.2 | |
Lymphoma_burkitts(Raji) | 12.9 | |
MedullaOblongata | 35.3 | |
OccipitalLobe | 128.25 | |
OlfactoryBulb | 639.35 | |
Ovary | 44.1 | |
Pancreas | 16.9 | |
PancreaticIslet | 143.9 | |
ParietalLobe | 32.1 | |
Pituitary | 107 | |
Placenta | 410.75 | |
Pons | 13.6 | |
PrefrontalCortex | 233.95 | |
Prostate | 68.65 | |
Salivarygland | 67.1 | |
SkeletalMuscle | 17.5 | |
Skin | 72.35 | |
SmoothMuscle | 1308.1 | |
Spinalcord | 557.9 | |
SubthalamicNucleus | 39 | |
SuperiorCervicalGanglion | 36.35 | |
TemporalLobe | 31.15 | |
Testis | 13.4 | |
TestisGermCell | 271.95 | |
TestisIntersitial | 33.75 | |
TestisLeydigCell | 72.65 | |
TestisSeminiferousTubule | 75 | |
Thalamus | 152.8 | |
Thymus | 54.55 | |
Thyroid | 404.85 | |
Tongue | 57.4 | |
Tonsil | 89.8 | |
Trachea | 297.6 | |
TrigeminalGanglion | 16.05 | |
Uterus | 902.05 | |
UterusCorpus | 48.45 | |
WholeBlood | 974.5 | |
Wholebrain | 138.9 | |
colon | 585.2 | |
pineal_day | 835.86 | |
pineal_night | 568 | |
retina | 391.375 | |
small_intestine | 770.1 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: A_23_P377957
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 6.85 ± 0.69 | |
Basal Forebrain | 7.3 ± 0.35 | |
Basal Part of Pons | 6.55 ± 0.63 | |
Cerebellar Cortex | 7.78 ± 0.34 | |
Cerebellar Nuclei | 7.37 ± 0.33 | |
Claustrum | 5.93 ± 0.58 | |
Epithalamus | 7.55 ± 0.29 | |
Frontal Lobe | 7.34 ± 0.48 | |
Globus Pallidus | 8.27 ± 0.61 | |
Hypothalamus | 7.38 ± 0.34 | |
Insula | 7.53 ± 0.43 | |
Limbic Lobe | 7.53 ± 0.52 | |
Mesencephalon | 7.52 ± 0.42 | |
Myelencephalon | 7.33 ± 0.61 | |
Occipital Lobe | 6.8 ± 0.39 | |
Parietal Lobe | 7.03 ± 0.45 | |
Pontine Tegmentum | 7.45 ± 0.47 | |
Striatum | 7.57 ± 0.7 | |
Subthalamus | 7.51 ± 0.53 | |
Temporal Lobe | 7.31 ± 0.44 | |
Thalamus | 7.54 ± 0.39 | |
White Matter | 6.96 ± 0.77 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Kctd12 | CB | Cerebellum | 17.6 | |
83.33 | ||||
Kctd12 | CTX | Cerebral cortex | 8.85 | |
9.58 | ||||
Kctd12 | HIP | Hippocampal region | 52.28 | |
93.71 | ||||
Kctd12 | HPF | Hippocampal formation | 38.38 | |
66.54 | ||||
Kctd12 | HY | Hypothalamus | 2.73 | |
2.88 | ||||
Kctd12 | LSX | Lateral septal complex | 35.91 | |
39.84 | ||||
Kctd12 | MB | Midbrain | 4.12 | |
4.62 | ||||
Kctd12 | MY | Medulla | 3.14 | |
6.57 | ||||
Kctd12 | OLF | Olfactory bulb | 31.13 | |
38.62 | ||||
Kctd12 | P | Pons | 2.51 | |
3.49 | ||||
Kctd12 | PAL | Pallidum | 11.33 | |
12.01 | ||||
Kctd12 | RHP | Retrohippocampal region | 20.17 | |
22.99 | ||||
Kctd12 | sAMY | Striatum-like amygdalar nuclei | 18.54 | |
19.01 | ||||
Kctd12 | STR | Striatum | 19.06 | |
16.96 | ||||
Kctd12 | STRd | Striatum dorsal region | 14.06 | |
11.87 | ||||
Kctd12 | STRv | Striatum ventral region | 27.99 | |
22.81 | ||||
Kctd12 | TH | Thalamus | 5.65 | |
8.78 |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
KCD12_HUMAN_0 | 0 | 0 | 0 | DLQLVLPDYFPER | PRIDE |
KCD12_HUMAN_0 | 0 | 0 | 0 | EAEYFELPELVR | PRIDE |
KCD12_HUMAN_0 | 0 | 0 | 0 | EVFGDTLNESR | PRIDE |
KCD12_HUMAN_0 | 0 | 0 | 0 | LGAPQQPGPGPPPSR | PRIDE |
KCD12_HUMAN_115 | 12 | 115 | 126 | EAEYFELPELVR | PRIDE |
KCD12_HUMAN_115 | 13 | 115 | 127 | EAEYFELPELVRR | PRIDE |
KCD12_HUMAN_127 | 16 | 127 | 142 | RLGAPQQPGPGPPPSR | PRIDE |
KCD12_HUMAN_128 | 15 | 128 | 142 | LGAPQQPGPGPPPSR | PRIDE |
KCD12_HUMAN_128 | 16 | 128 | 143 | LGAPQQPGPGPPPSRR | PRIDE |
KCD12_HUMAN_184 | 22 | 184 | 205 | SPSGGAAGPLLTPSQSLDGSRR | PRIDE |
KCD12_HUMAN_235 | 22 | 235 | 256 | ITVCGKTSLAKEVFGDTLNESR | PRIDE |
KCD12_HUMAN_274 | 10 | 274 | 283 | FNFLEQAFDK | PRIDE |
KCD12_HUMAN_62 | 12 | 62 | 73 | MFTQQQPQELAR | PRIDE |
KCD12_HUMAN_97 | 13 | 97 | 109 | DLQLVLPDYFPER | PRIDE |
PAp00009719 | 13 | 50 | 62 | CTVVSVPDSLLWR | Peptide Atlas |