AutismKB 2.0

Annotation Detail for CIRBP


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Basic Information Top
Gene Symbol:CIRBP ( CIRP )
Gene Full Name: cold inducible RNA binding protein
Band: 19p13.3
Quick LinksEntrez ID:1153; OMIM: 602649; Uniprot ID:CIRBP_HUMAN; ENSEMBL ID: ENSG00000099622; HGNC ID: 1982
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body28 / 70761395
blastocyst41 / 62319657
fetus148 / 564012262
neonate2 / 3109764
infant5 / 23620211
juvenile9 / 55556161
adult441 / 1939121227
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma5 / 17475286
breast (mammary gland) tumor22 / 94178233
cervical tumor4 / 34366116
chondrosarcoma20 / 82823241
colorectal tumor18 / 114246157
esophageal tumor8 / 17290462
gastrointestinal tumor10 / 11936983
germ cell tumor49 / 263845185
glioma45 / 106883421
head and neck tumor39 / 136302286
kidney tumor7 / 68959101
leukemia29 / 95842302
liver tumor6 / 9635962
lung tumor42 / 103127407
lymphoma12 / 71755167
non-neoplasia43 / 97250442
normal1119 / 3360307333
ovarian tumor9 / 76682117
pancreatic tumor24 / 104616229
primitive neuroectodermal tumor of the CNS36 / 125680286
prostate cancer18 / 102680175
retinoblastoma13 / 46356280
skin tumor20 / 124949160
soft tissue/muscle tissue tumor21 / 125191167
uterine tumor22 / 90257243
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland5 / 33197150
ascites3 / 4001574
bladder11 / 29757369
blood18 / 123478145
bone23 / 71655320
bone marrow9 / 48801184
brain588 / 1100989534
cervix7 / 48171145
connective tissue43 / 149255288
ear3 / 16212185
embryonic tissue127 / 215722588
esophagus8 / 20209395
eye81 / 211054383
heart16 / 89626178
intestine47 / 234472200
kidney37 / 211777174
larynx1 / 2414541
liver10 / 20774348
lung92 / 336974273
lymph9 / 44270203
lymph node31 / 91610338
mammary gland28 / 153271182
mouth26 / 67052387
muscle17 / 107715157
nerve10 / 15768634
ovary19 / 102051186
pancreas75 / 214812349
parathyroid1 / 2053948
pharynx4 / 4132896
pituitary gland4 / 16585241
placenta72 / 280825256
prostate44 / 189345232
salivary gland5 / 20155248
skin37 / 210574175
spleen45 / 53952834
stomach10 / 96619103
testis61 / 330442184
thymus112 / 811311380
thyroid19 / 47473400
tonsil7 / 16999411
trachea18 / 52413343
umbilical cord1 / 1368073
uterus55 / 232878236
vascular7 / 51780135
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 200810_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts656.55
Adipocyte136.25
AdrenalCortex383.5
Adrenalgland424.95
Amygdala623.8
Appendix136
AtrioventricularNode17.15
BDCA4+_DentriticCells1021.9
Bonemarrow79.75
BronchialEpithelialCells208.25
CD105+_Endothelial374.55
CD14+_Monocytes407.7
CD19+_BCells(neg._sel.)1446.6
CD33+_Myeloid478.35
CD34+684.75
CD4+_Tcells994.1
CD56+_NKCells1305.15
CD71+_EarlyErythroid161.45
CD8+_Tcells854.4
CardiacMyocytes204.4
Caudatenucleus311.5
Cerebellum325.9
CerebellumPeduncles839.85
CiliaryGanglion44.75
CingulateCortex364.85
Colorectaladenocarcinoma180.1
DorsalRootGanglion95.9
FetalThyroid939.75
Fetalbrain404.7
Fetalliver95.2
Fetallung431.15
GlobusPallidus198.15
Heart289.4
Hypothalamus1255.35
Kidney230.85
Leukemia_chronicMyelogenousK-562112.05
Leukemia_promyelocytic-HL-60115.7
Leukemialymphoblastic(MOLT-4)96.15
Liver59.4
Lung723.6
Lymphnode348.5
Lymphoma_burkitts(Daudi)197.95
Lymphoma_burkitts(Raji)116.2
MedullaOblongata315.95
OccipitalLobe478.05
OlfactoryBulb212.05
Ovary645.95
Pancreas350.6
PancreaticIslet1385.6
ParietalLobe470.15
Pituitary1612.4
Placenta572.6
Pons198.6
PrefrontalCortex942.4
Prostate1084.2
Salivarygland297.65
SkeletalMuscle36.6
Skin179.15
SmoothMuscle213.9
Spinalcord549.05
SubthalamicNucleus374.55
SuperiorCervicalGanglion38.8
TemporalLobe282.55
Testis510.4
TestisGermCell477.15
TestisIntersitial233.75
TestisLeydigCell193.35
TestisSeminiferousTubule257.5
Thalamus301.75
Thymus340.5
Thyroid1696.9
Tongue140.8
Tonsil236.85
Trachea260.45
TrigeminalGanglion24.85
Uterus941.9
UterusCorpus242.9
WholeBlood298.8
Wholebrain573.15
colon517.65
pineal_day1749
pineal_night1819.78
retina1316.6
small_intestine470.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_13354_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.05 ± 0.45
Basal Forebrain7.97 ± 0.22
Basal Part of Pons7.64 ± 0.39
Cerebellar Cortex7.99 ± 0.27
Cerebellar Nuclei7.63 ± 0.39
Claustrum8.05 ± 0.44
Epithalamus7.78 ± 0.31
Frontal Lobe7.63 ± 0.42
Globus Pallidus8.18 ± 0.27
Hypothalamus7.83 ± 0.2
Insula7.7 ± 0.16
Limbic Lobe7.64 ± 0.39
Mesencephalon7.72 ± 0.43
Myelencephalon7.71 ± 0.34
Occipital Lobe7.54 ± 0.33
Parietal Lobe7.59 ± 0.36
Pontine Tegmentum7.64 ± 0.38
Striatum7.62 ± 0.4
Subthalamus7.06 ± 0.8
Temporal Lobe7.69 ± 0.34
Thalamus7.64 ± 0.33
White Matter9.03 ± 0.37
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
CirbpCBCerebellum27.67
38.38
CirbpCTXCerebral cortex81.45
64.46
CirbpHIPHippocampal region37.94
43.47
CirbpHPFHippocampal formation47.75
46.95
CirbpHYHypothalamus51.29
42.38
CirbpLSXLateral septal complex34.77
25.26
CirbpMBMidbrain41.32
36.44
CirbpMYMedulla26.47
26.87
CirbpOLFOlfactory bulb67.82
62.2
CirbpPPons31.92
31.84
CirbpPALPallidum49.8
45.59
CirbpRHPRetrohippocampal region62.18
50.74
CirbpsAMYStriatum-like amygdalar nuclei73.66
58
CirbpSTRStriatum29.37
22.36
CirbpSTRdStriatum dorsal region20.71
16.3
CirbpSTRvStriatum ventral region37.22
25.48
CirbpTHThalamus44.79
36.91
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CIRBP_HUMAN_162 11 162 172 DSYDSYATHNE PRIDE
CIRBP_HUMAN_62 14 62 75 DAMMAMNGKSVDGR PRIDE
PAp00068139 14 48 61 GFGFVTFENIDDAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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