Annotation Detail for GBP4
Basic Information Top
| Gene Symbol: | GBP4 ( Mpa2 ) |
|---|---|
| Gene Full Name: | guanylate binding protein 4 |
| Band: | 1p22.2 |
| Quick Links | Entrez ID:115361; OMIM: 612466; Uniprot ID:GBP4_HUMAN; ENSEMBL ID: ENSG00000162654; HGNC ID: 20480 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.409925
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 1 / 564012 | 1 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 42 / 1939121 | 21 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 37 / 3360307 | 11 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 20 / 90257 | 221 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 3 / 1100989 | 2 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 1 / 211054 | 4 | |
| heart | 1 / 89626 | 11 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 6 / 96619 | 62 | |
| testis | 1 / 330442 | 3 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 22 / 232878 | 94 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: A_23_P103496
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.16 ± 0.23 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.47 ± 0.35 | |
| Basal Part of Pons | 7.44 ± 0.24 | |
| Cerebellar Cortex | 7.08 ± 0.22 | |
| Cerebellar Nuclei | 8.31 ± 0.39 | |
| Claustrum | 7.7 ± 0.42 | |
| Epithalamus | 7.43 ± 0.58 | |
| Frontal Lobe | 7.56 ± 0.43 | |
| Globus Pallidus | 8.74 ± 0.35 | |
| Hypothalamus | 7.31 ± 0.49 | |
| Insula | 7.4 ± 0.49 | |
| Limbic Lobe | 7.52 ± 0.54 | |
| Mesencephalon | 7.83 ± 0.45 | |
| Myelencephalon | 7.75 ± 0.45 | |
| Occipital Lobe | 7.72 ± 0.51 | |
| Parietal Lobe | 7.51 ± 0.47 | |
| Pontine Tegmentum | 7.6 ± 0.57 | |
| Striatum | 8.41 ± 0.46 | |
| Subthalamus | 7.98 ± 0.1 | |
| Temporal Lobe | 7.4 ± 0.36 | |
| Thalamus | 7.86 ± 0.38 | |
| White Matter | 8.4 ± 0.21 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gbp3 | CB | Cerebellum | 0.71 | |
| 1.34 | | |||
| Gbp3 | CTX | Cerebral cortex | 3.13 | |
| 2.52 | | |||
| Gbp3 | HIP | Hippocampal region | 3.97 | |
| 3.44 | | |||
| Gbp3 | HPF | Hippocampal formation | 3.15 | |
| 2.61 | | |||
| Gbp3 | HY | Hypothalamus | 0.23 | |
| 0.25 | | |||
| Gbp3 | LSX | Lateral septal complex | 0.66 | |
| 0.61 | | |||
| Gbp3 | MB | Midbrain | 0.49 | |
| 0.8 | | |||
| Gbp3 | MY | Medulla | 0.47 | |
| 0.97 | | |||
| Gbp3 | OLF | Olfactory bulb | 1.68 | |
| 1.65 | | |||
| Gbp3 | P | Pons | 0.92 | |
| 2.88 | | |||
| Gbp3 | PAL | Pallidum | 0.68 | |
| 0.58 | | |||
| Gbp3 | RHP | Retrohippocampal region | 1.47 | |
| 1.22 | | |||
| Gbp3 | sAMY | Striatum-like amygdalar nuclei | 2.05 | |
| 1.86 | | |||
| Gbp3 | STR | Striatum | 1.08 | |
| 0.86 | | |||
| Gbp3 | STRd | Striatum dorsal region | 0.95 | |
| 0.76 | | |||
| Gbp3 | STRv | Striatum ventral region | 1.42 | |
| 0.97 | | |||
| Gbp3 | TH | Thalamus | 0.8 | |
| 0.79 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| GBP4_HUMAN_511 | 11 | 511 | 521 | EAAEKEQELLR | PRIDE |
| PAp00026647 | 18 | 359 | 376 | LPTDTLQELLDVHAACER | Peptide Atlas |