Annotation Detail for GBP5
Basic Information Top
| Gene Symbol: | GBP5 ( GBP-5 ) |
|---|---|
| Gene Full Name: | guanylate binding protein 5 |
| Band: | 1p22.2 |
| Quick Links | Entrez ID:115362; OMIM: 611467; Uniprot ID:GBP5_HUMAN; ENSEMBL ID: ENSG00000154451; HGNC ID: 19895 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.513726
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 2 / 564012 | 3 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 55 / 1939121 | 28 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 85 / 3360307 | 25 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 9 / 90257 | 99 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 37 / 123478 | 299 |  |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 4 / 1100989 | 3 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 13 / 336974 | 38 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 6 / 53952 | 111 | |
| stomach | 4 / 96619 | 41 | |
| testis | 3 / 330442 | 9 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 15 / 232878 | 64 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P74290
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.83 ± 1.07 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.45 ± 0.63 | |
| Basal Part of Pons | 3.24 ± 0.53 | |
| Cerebellar Cortex | 2.2 ± 0.56 | |
| Cerebellar Nuclei | 2.69 ± 0.64 | |
| Claustrum | 2.79 ± 0.68 | |
| Epithalamus | 3.53 ± 0.76 | |
| Frontal Lobe | 2.45 ± 0.76 | |
| Globus Pallidus | 3.79 ± 0.67 | |
| Hypothalamus | 2.63 ± 0.81 | |
| Insula | 2.19 ± 0.87 | |
| Limbic Lobe | 2.43 ± 0.72 | |
| Mesencephalon | 2.62 ± 0.86 | |
| Myelencephalon | 2.73 ± 0.76 | |
| Occipital Lobe | 2.75 ± 0.86 | |
| Parietal Lobe | 2.54 ± 0.78 | |
| Pontine Tegmentum | 2.41 ± 0.82 | |
| Striatum | 3.13 ± 0.87 | |
| Subthalamus | 2.84 ± 1.18 | |
| Temporal Lobe | 2.62 ± 0.79 | |
| Thalamus | 2.71 ± 0.73 | |
| White Matter | 3.35 ± 1.02 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gbp5 | CB | Cerebellum | 2.27 | |
| 3.3 | | |||
| Gbp5 | CTX | Cerebral cortex | 7.23 | |
| 5.75 | | |||
| Gbp5 | HIP | Hippocampal region | 3.29 | |
| 4.28 | | |||
| Gbp5 | HPF | Hippocampal formation | 3.39 | |
| 3.72 | | |||
| Gbp5 | HY | Hypothalamus | 1.34 | |
| 1.26 | | |||
| Gbp5 | LSX | Lateral septal complex | 0.64 | |
| 0.93 | | |||
| Gbp5 | MB | Midbrain | 1.3 | |
| 1.76 | | |||
| Gbp5 | MY | Medulla | 2.28 | |
| 2.45 | | |||
| Gbp5 | OLF | Olfactory bulb | 9.03 | |
| 7.55 | | |||
| Gbp5 | P | Pons | 1.39 | |
| 1.79 | | |||
| Gbp5 | PAL | Pallidum | 2.11 | |
| 2.02 | | |||
| Gbp5 | RHP | Retrohippocampal region | 3.73 | |
| 2.98 | | |||
| Gbp5 | sAMY | Striatum-like amygdalar nuclei | 2.62 | |
| 1.99 | | |||
| Gbp5 | STR | Striatum | 2.62 | |
| 2.2 | | |||
| Gbp5 | STRd | Striatum dorsal region | 2.99 | |
| 2.56 | | |||
| Gbp5 | STRv | Striatum ventral region | 2.23 | |
| 1.71 | | |||
| Gbp5 | TH | Thalamus | 1.72 | |
| 1.57 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00011064 | 14 | 397 | 410 | NLEASSDYCSALLK | Peptide Atlas |