Annotation Detail for LRRC56
Basic Information Top
| Gene Symbol: | LRRC56 ( DKFZp761L1518,FLJ00101 ) |
|---|---|
| Gene Full Name: | leucine rich repeat containing 56 |
| Band: | 11p15.5 |
| Quick Links | Entrez ID:115399; OMIM: NA; Uniprot ID:LRC56_HUMAN; ENSEMBL ID: ENSG00000161328; HGNC ID: 25430 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.567655
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 3 / 564012 | 5 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 8 / 1939121 | 4 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 2 / 106883 | 18 |  |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 15 / 3360307 | 4 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 15 / 1100989 | 13 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 1 / 89626 | 11 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_9578_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.83 ± 0.99 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.77 ± 0.66 | |
| Basal Part of Pons | 3.35 ± 0.41 | |
| Cerebellar Cortex | 2.54 ± 0.55 | |
| Cerebellar Nuclei | 3.35 ± 0.54 | |
| Claustrum | 3.18 ± 0.96 | |
| Epithalamus | 2.14 ± 0.42 | |
| Frontal Lobe | 2.7 ± 0.74 | |
| Globus Pallidus | 3.13 ± 0.87 | |
| Hypothalamus | 2.36 ± 0.74 | |
| Insula | 2.34 ± 1.02 | |
| Limbic Lobe | 2.6 ± 0.71 | |
| Mesencephalon | 2.52 ± 0.8 | |
| Myelencephalon | 2.55 ± 0.67 | |
| Occipital Lobe | 2.47 ± 0.8 | |
| Parietal Lobe | 2.53 ± 0.72 | |
| Pontine Tegmentum | 2.65 ± 0.78 | |
| Striatum | 2.62 ± 0.74 | |
| Subthalamus | 2.51 ± 0.22 | |
| Temporal Lobe | 2.59 ± 0.65 | |
| Thalamus | 2.64 ± 0.76 | |
| White Matter | 1.47 ± 0.59 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lrrc56 | CB | Cerebellum | 7.2 |  |
| 11.12 | | |||
| Lrrc56 | CTX | Cerebral cortex | 27.79 | |
| 22.34 | | |||
| Lrrc56 | HIP | Hippocampal region | 9.55 | |
| 12 | | |||
| Lrrc56 | HPF | Hippocampal formation | 17.01 | |
| 17.96 | | |||
| Lrrc56 | HY | Hypothalamus | 0.25 | |
| 0.56 | | |||
| Lrrc56 | LSX | Lateral septal complex | 0.58 | |
| 0.38 | | |||
| Lrrc56 | MB | Midbrain | 2.35 | |
| 3.63 | | |||
| Lrrc56 | MY | Medulla | 1.37 | |
| 1.57 | | |||
| Lrrc56 | OLF | Olfactory bulb | 16.22 | |
| 14.21 | | |||
| Lrrc56 | P | Pons | 1.14 | |
| 1.62 | | |||
| Lrrc56 | PAL | Pallidum | 0.48 | |
| 0.51 | | |||
| Lrrc56 | RHP | Retrohippocampal region | 29.09 | |
| 26.15 | | |||
| Lrrc56 | sAMY | Striatum-like amygdalar nuclei | 1.37 | |
| 1.05 | | |||
| Lrrc56 | STR | Striatum | 4.05 | |
| 3.01 | | |||
| Lrrc56 | STRd | Striatum dorsal region | 5.79 | |
| 4.41 | | |||
| Lrrc56 | STRv | Striatum ventral region | 0.72 | |
| 0.52 | | |||
| Lrrc56 | TH | Thalamus | 1.04 | |
| 0.94 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| LRC56_HUMAN_22 | 15 | 22 | 36 | ELSWQGLHNPCPQSK | PRIDE |
| LRC56_HUMAN_270 | 6 | 270 | 275 | GAPIRR | PRIDE |
| LRC56_HUMAN_400 | 16 | 400 | 415 | HPESQQEGAVAPWGPR | PRIDE |
| LRC56_HUMAN_417 | 12 | 417 | 428 | VPEEQVHQAEPK | PRIDE |
| LRC56_HUMAN_45 | 14 | 45 | 58 | LGEQLVEEYLSPAR | PRIDE |
| LRC56_HUMAN_481 | 20 | 481 | 500 | VLGSWGPGLGDGVAAVPVLR | PRIDE |
| LRC56_HUMAN_73 | 9 | 73 | 81 | TLEMCVDTR | PRIDE |