AutismKB 2.0

Annotation Detail for C16orf42


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Basic Information Top
Gene Symbol:C16orf42 ( MGC24381 )
Gene Full Name: chromosome 16 open reading frame 42
Band: 16p13.3
Quick LinksEntrez ID:115939; OMIM: NA; Uniprot ID:CP042_HUMAN; ENSEMBL ID: ENSG00000007520; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst0 / 623190 
fetus22 / 56401239
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult71 / 193912136
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma5 / 8282360
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor4 / 26384515
glioma12 / 106883112
head and neck tumor0 / 1363020 
kidney tumor3 / 6895943
leukemia3 / 9584231
liver tumor0 / 963590 
lung tumor5 / 10312748
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal91 / 336030727
ovarian tumor12 / 76682156
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer1 / 1026809
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone3 / 7165541
bone marrow1 / 4880120
brain24 / 110098921
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye10 / 21105447
heart5 / 8962655
intestine7 / 23447229
kidney5 / 21177723
larynx0 / 241450 
liver0 / 2077430 
lung24 / 33697471
lymph0 / 442700 
lymph node8 / 9161087
mammary gland3 / 15327119
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary13 / 102051127
pancreas9 / 21481241
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta4 / 28082514
prostate6 / 18934531
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach1 / 9661910
testis2 / 3304426
thymus3 / 8113136
thyroid0 / 474730 
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus12 / 23287851
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213105_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts129.1
Adipocyte28.6
AdrenalCortex43.5
Adrenalgland20.3
Amygdala33.3
Appendix33.7
AtrioventricularNode26.2
BDCA4+_DentriticCells80.4
Bonemarrow30.05
BronchialEpithelialCells39.9
CD105+_Endothelial132.65
CD14+_Monocytes94.05
CD19+_BCells(neg._sel.)104
CD33+_Myeloid89.2
CD34+121.5
CD4+_Tcells43.9
CD56+_NKCells134.55
CD71+_EarlyErythroid48.45
CD8+_Tcells37.55
CardiacMyocytes50.6
Caudatenucleus29.9
Cerebellum22.5
CerebellumPeduncles41.45
CiliaryGanglion20.75
CingulateCortex35.7
Colorectaladenocarcinoma36.4
DorsalRootGanglion26.85
FetalThyroid34.85
Fetalbrain38.65
Fetalliver21.65
Fetallung17.35
GlobusPallidus24.55
Heart100.85
Hypothalamus88.2
Kidney24
Leukemia_chronicMyelogenousK-56227.5
Leukemia_promyelocytic-HL-6027.4
Leukemialymphoblastic(MOLT-4)24.3
Liver59.6
Lung91.65
Lymphnode22.75
Lymphoma_burkitts(Daudi)40.45
Lymphoma_burkitts(Raji)69.85
MedullaOblongata27.65
OccipitalLobe29.9
OlfactoryBulb26.8
Ovary14.9
Pancreas27.05
PancreaticIslet33.5
ParietalLobe39.1
Pituitary37.05
Placenta30.3
Pons31.85
PrefrontalCortex36.2
Prostate104.35
Salivarygland23.9
SkeletalMuscle40.2
Skin24.15
SmoothMuscle41.95
Spinalcord48.3
SubthalamicNucleus41.7
SuperiorCervicalGanglion36.5
TemporalLobe37.2
Testis35.95
TestisGermCell19.25
TestisIntersitial27.3
TestisLeydigCell31.45
TestisSeminiferousTubule25.1
Thalamus53.15
Thymus24.8
Thyroid67.85
Tongue24.4
Tonsil22.15
Trachea15.35
TrigeminalGanglion43.1
Uterus24.7
UterusCorpus28.9
WholeBlood39.4
Wholebrain48.75
colon32.7
pineal_day61.56
pineal_night57.4
retina48.675
small_intestine29.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_196_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.83 ± 0.65
Basal Forebrain6.32 ± 0.3
Basal Part of Pons6.38 ± 0.76
Cerebellar Cortex6.29 ± 0.65
Cerebellar Nuclei6.09 ± 0.58
Claustrum5.57 ± 0.85
Epithalamus6.27 ± 0.7
Frontal Lobe6.41 ± 0.56
Globus Pallidus6.18 ± 0.37
Hypothalamus6.36 ± 0.59
Insula6.34 ± 0.44
Limbic Lobe5.93 ± 0.71
Mesencephalon6.18 ± 0.57
Myelencephalon6.21 ± 0.58
Occipital Lobe5.48 ± 0.62
Parietal Lobe6.09 ± 0.51
Pontine Tegmentum6.08 ± 0.54
Striatum5.9 ± 0.46
Subthalamus6.01 ± 0.65
Temporal Lobe6.42 ± 0.51
Thalamus6.32 ± 0.47
White Matter6.15 ± 0.48
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
0610007P22RikCBCerebellum0.23
0.38
0610007P22RikCTXCerebral cortex0.34
0.42
0610007P22RikHIPHippocampal region0.62
0.57
0610007P22RikHPFHippocampal formation0.81
0.79
0610007P22RikHYHypothalamus0.78
1.5
0610007P22RikLSXLateral septal complex0.06
0.04
0610007P22RikMBMidbrain0.07
0.12
0610007P22RikMYMedulla1.03
1.4
0610007P22RikOLFOlfactory bulb1.87
1.94
0610007P22RikPPons0.61
1.13
0610007P22RikPALPallidum0.12
0.09
0610007P22RikRHPRetrohippocampal region1.05
1.03
0610007P22RiksAMYStriatum-like amygdalar nuclei1.42
0.88
0610007P22RikSTRStriatum0.23
0.17
0610007P22RikSTRdStriatum dorsal region0.07
0.04
0610007P22RikSTRvStriatum ventral region0.26
0.31
0610007P22RikTHThalamus0.03
0.03
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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