Annotation Detail for LYPD1
Basic Information Top
| Gene Symbol: | LYPD1 ( FLJ41033,LYPDC1,MGC29643,PHTS ) |
|---|---|
| Gene Full Name: | LY6/PLAUR domain containing 1 |
| Band: | 2q21.2 |
| Quick Links | Entrez ID:116372; OMIM: 610450; Uniprot ID:LYPD1_HUMAN; ENSEMBL ID: ENSG00000150551; HGNC ID: 28431 |
| Relate to Another Database: | SFARIGene; denovo-db |
Unigene EST- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 212909_at
| Cell line | Expression level | Expression bar |
|---|---|---|
 | ||
| 721_B_lymphoblasts | 5.2 |  |
| Adipocyte | 4.15 | |
| AdrenalCortex | 4.55 | |
| Adrenalgland | 3.6 | |
| Amygdala | 4.55 | |
| Appendix | 4.35 | |
| AtrioventricularNode | 3.35 | |
| BDCA4+_DentriticCells | 4.45 | |
| Bonemarrow | 4.25 | |
| BronchialEpithelialCells | 4.1 | |
| CD105+_Endothelial | 4.25 | |
| CD14+_Monocytes | 4.45 | |
| CD19+_BCells(neg._sel.) | 4.45 | |
| CD33+_Myeloid | 5.35 | |
| CD34+ | 5.3 | |
| CD4+_Tcells | 4.45 | |
| CD56+_NKCells | 5 | |
| CD71+_EarlyErythroid | 3.95 | |
| CD8+_Tcells | 4 | |
| CardiacMyocytes | 8.9 | |
| Caudatenucleus | 3.85 | |
| Cerebellum | 3.5 | |
| CerebellumPeduncles | 4.8 | |
| CiliaryGanglion | 3.1 | |
| CingulateCortex | 4.35 | |
| Colorectaladenocarcinoma | 4.25 | |
| DorsalRootGanglion | 3.3 | |
| FetalThyroid | 4.1 | |
| Fetalbrain | 4.3 | |
| Fetalliver | 3.7 | |
| Fetallung | 3.4 | |
| GlobusPallidus | 3.15 | |
| Heart | 5.6 | |
| Hypothalamus | 10 | |
| Kidney | 3.5 | |
| Leukemia_chronicMyelogenousK-562 | 3.8 | |
| Leukemia_promyelocytic-HL-60 | 3.75 | |
| Leukemialymphoblastic(MOLT-4) | 3.35 | |
| Liver | 5.7 | |
| Lung | 4.6 | |
| Lymphnode | 3.6 | |
| Lymphoma_burkitts(Daudi) | 5.4 | |
| Lymphoma_burkitts(Raji) | 6.05 | |
| MedullaOblongata | 3.85 | |
| OccipitalLobe | 3.8 | |
| OlfactoryBulb | 3.35 | |
| Ovary | 2.8 | |
| Pancreas | 3.45 | |
| PancreaticIslet | 5.05 | |
| ParietalLobe | 4.5 | |
| Pituitary | 5 | |
| Placenta | 4.3 | |
| Pons | 4 | |
| PrefrontalCortex | 5.2 | |
| Prostate | 4.85 | |
| Salivarygland | 3.4 | |
| SkeletalMuscle | 5.3 | |
| Skin | 3.3 | |
| SmoothMuscle | 42.95 |  |
| Spinalcord | 4.55 | |
| SubthalamicNucleus | 3.9 | |
| SuperiorCervicalGanglion | 4.95 | |
| TemporalLobe | 3.9 | |
| Testis | 3.6 | |
| TestisGermCell | 3.5 | |
| TestisIntersitial | 3.5 | |
| TestisLeydigCell | 4.2 | |
| TestisSeminiferousTubule | 3.6 | |
| Thalamus | 4.35 | |
| Thymus | 3.25 | |
| Thyroid | 5.2 | |
| Tongue | 4.2 | |
| Tonsil | 4.1 | |
| Trachea | 3.5 | |
| TrigeminalGanglion | 4.35 | |
| Uterus | 3.4 | |
| UterusCorpus | 3.8 | |
| WholeBlood | 4.55 | |
| Wholebrain | 3.65 | |
| colon | 4.25 | |
| pineal_day | 5.22 | |
| pineal_night | 5.12 | |
| retina | 5.35 | |
| small_intestine | 4.05 | |
- Probe name: A_32_P101031
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 10.5 ± 0.68 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 11.14 ± 0.27 | |
| Basal Part of Pons | 9.02 ± 0.32 | |
| Cerebellar Cortex | 9.65 ± 0.18 | |
| Cerebellar Nuclei | 9.78 ± 0.42 | |
| Claustrum | 9.35 ± 0.34 | |
| Epithalamus | 10.45 ± 0.46 | |
| Frontal Lobe | 10.11 ± 0.47 | |
| Globus Pallidus | 11.02 ± 0.35 | |
| Hypothalamus | 10.63 ± 0.63 | |
| Insula | 10.41 ± 0.41 | |
| Limbic Lobe | 10.4 ± 0.6 | |
| Mesencephalon | 10.36 ± 0.5 | |
| Myelencephalon | 10.25 ± 0.61 | |
| Occipital Lobe | 9.97 ± 0.45 | |
| Parietal Lobe | 10.08 ± 0.51 | |
| Pontine Tegmentum | 10.39 ± 0.34 | |
| Striatum | 11.29 ± 0.64 | |
| Subthalamus | 10.19 ± 0.46 | |
| Temporal Lobe | 10.08 ± 0.42 | |
| Thalamus | 9.88 ± 0.48 | |
| White Matter | 8.69 ± 0.28 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lypd1 | CB | Cerebellum | 16.25 |  |
| 26.26 | | |||
| Lypd1 | CTX | Cerebral cortex | 48.57 | |
| 59.49 | | |||
| Lypd1 | HIP | Hippocampal region | 70.78 | |
| 95.44 | | |||
| Lypd1 | HPF | Hippocampal formation | 69.29 | |
| 87.34 | | |||
| Lypd1 | HY | Hypothalamus | 35.06 | |
| 37.53 | | |||
| Lypd1 | LSX | Lateral septal complex | 97.87 | |
| 100 | | |||
| Lypd1 | MB | Midbrain | 30.62 | |
| 32.69 | | |||
| Lypd1 | MY | Medulla | 25.81 | |
| 33.75 | | |||
| Lypd1 | OLF | Olfactory bulb | 49.43 | |
| 70.23 | | |||
| Lypd1 | P | Pons | 23.95 | |
| 28.18 | | |||
| Lypd1 | PAL | Pallidum | 49.79 | |
| 64.43 | | |||
| Lypd1 | RHP | Retrohippocampal region | 66.49 | |
| 79.64 | | |||
| Lypd1 | sAMY | Striatum-like amygdalar nuclei | 81.3 | |
| 86.07 | | |||
| Lypd1 | STR | Striatum | 60.01 | |
| 63.61 | | |||
| Lypd1 | STRd | Striatum dorsal region | 42.72 | |
| 38.69 | | |||
| Lypd1 | STRv | Striatum ventral region | 79.65 | |
| 78.94 | | |||
| Lypd1 | TH | Thalamus | 20.69 | |
| 23.63 | |