Annotation Detail for MRPL54
Basic Information Top
| Gene Symbol: | MRPL54 ( L54mt,MRP-L54 ) |
|---|---|
| Gene Full Name: | mitochondrial ribosomal protein L54 |
| Band: | 19p13.3 |
| Quick Links | Entrez ID:116541; OMIM: 611858; Uniprot ID:RM54_HUMAN; ENSEMBL ID: ENSG00000183617; HGNC ID: 16685 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.356578
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 13 / 564012 | 23 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 54 / 1939121 | 27 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 8 / 106883 | 74 |  |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 73 / 3360307 | 21 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 13 / 1100989 | 11 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 1 / 89626 | 11 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 11 / 336974 | 32 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 8 / 107715 | 74 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 8 / 210574 | 37 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 5 / 96619 | 51 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_4680_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.28 ± 0.59 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.12 ± 0.25 | |
| Basal Part of Pons | 4.48 ± 0.58 | |
| Cerebellar Cortex | 4.41 ± 0.58 | |
| Cerebellar Nuclei | 4.19 ± 0.42 | |
| Claustrum | 3.74 ± 0.83 | |
| Epithalamus | 4.31 ± 0.63 | |
| Frontal Lobe | 4.43 ± 0.53 | |
| Globus Pallidus | 3.9 ± 0.65 | |
| Hypothalamus | 4.14 ± 0.5 | |
| Insula | 4.38 ± 0.38 | |
| Limbic Lobe | 4.17 ± 0.49 | |
| Mesencephalon | 4.25 ± 0.46 | |
| Myelencephalon | 4.21 ± 0.57 | |
| Occipital Lobe | 3.94 ± 0.37 | |
| Parietal Lobe | 4.14 ± 0.46 | |
| Pontine Tegmentum | 4.25 ± 0.48 | |
| Striatum | 4.18 ± 0.44 | |
| Subthalamus | 4 ± 0.63 | |
| Temporal Lobe | 4.35 ± 0.44 | |
| Thalamus | 4.18 ± 0.52 | |
| White Matter | 3.76 ± 0.08 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Mrpl54 | CB | Cerebellum | 14.48 | |
| 18.23 | | |||
| Mrpl54 | CTX | Cerebral cortex | 11.6 | |
| 9.21 | | |||
| Mrpl54 | HIP | Hippocampal region | 8.96 | |
| 9.48 | | |||
| Mrpl54 | HPF | Hippocampal formation | 8.97 | |
| 8.56 | | |||
| Mrpl54 | HY | Hypothalamus | 5.18 | |
| 4.94 | | |||
| Mrpl54 | LSX | Lateral septal complex | 2.8 | |
| 2.13 | | |||
| Mrpl54 | MB | Midbrain | 7.02 | |
| 8.13 | | |||
| Mrpl54 | MY | Medulla | 14.08 | |
| 20.2 | | |||
| Mrpl54 | OLF | Olfactory bulb | 13.6 | |
| 11.39 | | |||
| Mrpl54 | P | Pons | 11.94 | |
| 15.99 | | |||
| Mrpl54 | PAL | Pallidum | 7.76 | |
| 9.18 | | |||
| Mrpl54 | RHP | Retrohippocampal region | 9.41 | |
| 7.65 | | |||
| Mrpl54 | sAMY | Striatum-like amygdalar nuclei | 5.07 | |
| 4.34 | | |||
| Mrpl54 | STR | Striatum | 4.39 | |
| 3.79 | | |||
| Mrpl54 | STRd | Striatum dorsal region | 3.86 | |
| 3.41 | | |||
| Mrpl54 | STRv | Striatum ventral region | 6.22 | |
| 5.02 | | |||
| Mrpl54 | TH | Thalamus | 10.4 | |
| 10.14 | |