Annotation Detail for LRG1
Basic Information Top
| Gene Symbol: | LRG1 ( HMFT1766,LRG ) |
|---|---|
| Gene Full Name: | leucine-rich alpha-2-glycoprotein 1 |
| Band: | 19p13.3 |
| Quick Links | Entrez ID:116844; OMIM: 611289; Uniprot ID:A2GL_HUMAN; ENSEMBL ID: ENSG00000171236; HGNC ID: 29480 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.655559
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 6 / 564012 | 10 |  |
| neonate | 1 / 31097 | 32 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 39 / 1939121 | 20 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 1 / 17290 | 57 |  |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 9 / 96359 | 93 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 61 / 3360307 | 18 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 7 / 123478 | 56 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 2 / 1100989 | 1 |  |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 38 / 207743 | 182 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 5 / 96619 | 51 | |
| testis | 1 / 330442 | 3 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_85_PI416383280
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.9 ± 1.1 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.65 ± 0.78 | |
| Basal Part of Pons | 1.16 ± 0.59 | |
| Cerebellar Cortex | 1.22 ± 0.7 | |
| Cerebellar Nuclei | 1.76 ± 0.66 | |
| Claustrum | 2.36 ± 0.93 | |
| Epithalamus | 1.14 ± 0.79 | |
| Frontal Lobe | 1.35 ± 0.78 | |
| Globus Pallidus | 2.17 ± 0.57 | |
| Hypothalamus | 1.61 ± 0.72 | |
| Insula | 1.44 ± 0.82 | |
| Limbic Lobe | 1.49 ± 0.81 | |
| Mesencephalon | 1.66 ± 0.91 | |
| Myelencephalon | 1.49 ± 0.76 | |
| Occipital Lobe | 1.31 ± 0.53 | |
| Parietal Lobe | 1.53 ± 0.99 | |
| Pontine Tegmentum | 1.59 ± 0.86 | |
| Striatum | 1.77 ± 0.91 | |
| Subthalamus | 1.48 ± 0.7 | |
| Temporal Lobe | 1.42 ± 0.82 | |
| Thalamus | 1.48 ± 0.74 | |
| White Matter | 1.86 ± 0.54 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lrg1 | CB | Cerebellum | 2.47 | |
| 4.23 | | |||
| Lrg1 | CTX | Cerebral cortex | 3.83 | |
| 3.26 | | |||
| Lrg1 | HIP | Hippocampal region | 1.89 | |
| 2.25 | | |||
| Lrg1 | HPF | Hippocampal formation | 1.6 | |
| 2.34 | | |||
| Lrg1 | HY | Hypothalamus | 0.13 | |
| 0.15 | | |||
| Lrg1 | LSX | Lateral septal complex | 0.16 | |
| 0.23 | | |||
| Lrg1 | MB | Midbrain | 0.63 | |
| 1.49 | | |||
| Lrg1 | MY | Medulla | 0.99 | |
| 1.64 | | |||
| Lrg1 | OLF | Olfactory bulb | 1.99 | |
| 1.71 | | |||
| Lrg1 | P | Pons | 0.39 | |
| 1.13 | | |||
| Lrg1 | PAL | Pallidum | 0.18 | |
| 0.19 | | |||
| Lrg1 | RHP | Retrohippocampal region | 1.21 | |
| 2.43 | | |||
| Lrg1 | sAMY | Striatum-like amygdalar nuclei | 0.12 | |
| 0.17 | | |||
| Lrg1 | STR | Striatum | 0.24 | |
| 0.25 | | |||
| Lrg1 | STRd | Striatum dorsal region | 0.27 | |
| 0.27 | | |||
| Lrg1 | STRv | Striatum ventral region | 0.23 | |
| 0.18 | | |||
| Lrg1 | TH | Thalamus | 0.9 | |
| 1.25 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| A2GL_HUMAN_114 | 6 | 114 | 119 | PVPQLR | PRIDE |
| A2GL_HUMAN_149 | 16 | 149 | 164 | ENQLEVLEVSWLHGLK | PRIDE |
| A2GL_HUMAN_165 | 11 | 165 | 175 | ALGHLDLSGNR | PRIDE |
| A2GL_HUMAN_192 | 18 | 192 | 209 | TLDLGENQLETLPPDLLR | PRIDE |
| A2GL_HUMAN_210 | 7 | 210 | 216 | GPLQLER | PRIDE |
| A2GL_HUMAN_224 | 6 | 224 | 229 | LQVLGK | PRIDE |
| A2GL_HUMAN_230 | 10 | 230 | 239 | DLLLPQPDLR | PRIDE |
| A2GL_HUMAN_251 | 10 | 251 | 260 | VAAGAFQGLR | PRIDE |
| A2GL_HUMAN_337 | 9 | 337 | 345 | GQTLLAVAK | PRIDE |
| PAp00026226 | 14 | 178 | 191 | KLPPGLLANFTLLR | Peptide Atlas |