Annotation Detail for AGAP3
Basic Information Top
| Gene Symbol: | AGAP3 ( CENTG3,CRAG,FLJ16146,FLJ34452,MRIP-1 ) |
|---|---|
| Gene Full Name: | ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 |
| Band: | 7q36.1 |
| Quick Links | Entrez ID:116988; OMIM: NA; Uniprot ID:AGAP3_HUMAN; ENSEMBL ID: ENSG00000133612; HGNC ID: 16923 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.647075
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 41 / 564012 | 72 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 159 / 1939121 | 81 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 6 / 94178 | 63 | |
| cervical tumor | 1 / 34366 | 29 |  |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 22 / 263845 | 83 | |
| glioma | 16 / 106883 | 149 | |
| head and neck tumor | 8 / 136302 | 58 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 15 / 103127 | 145 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 206 / 3360307 | 61 | |
| ovarian tumor | 9 / 76682 | 117 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 110 / 1100989 | 99 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 13 / 215722 | 60 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 24 / 211054 | 113 | |
| heart | 3 / 89626 | 33 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 1 / 24145 | 41 | |
| liver | 4 / 207743 | 19 | |
| lung | 27 / 336974 | 80 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 15 / 153271 | 97 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 11 / 102051 | 107 | |
| pancreas | 12 / 214812 | 55 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 7 / 210574 | 33 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 16 / 330442 | 48 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P317622
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.62 ± 0.59 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.65 ± 0.49 | |
| Basal Part of Pons | 5.05 ± 0.67 | |
| Cerebellar Cortex | 5.1 ± 0.65 | |
| Cerebellar Nuclei | 4.03 ± 0.58 | |
| Claustrum | 4.42 ± 1.12 | |
| Epithalamus | 4.62 ± 0.95 | |
| Frontal Lobe | 4.83 ± 0.65 | |
| Globus Pallidus | 4.06 ± 0.53 | |
| Hypothalamus | 4.31 ± 0.85 | |
| Insula | 4.9 ± 0.56 | |
| Limbic Lobe | 4.68 ± 0.76 | |
| Mesencephalon | 4.56 ± 0.7 | |
| Myelencephalon | 4.6 ± 0.74 | |
| Occipital Lobe | 4.04 ± 0.76 | |
| Parietal Lobe | 4.54 ± 0.66 | |
| Pontine Tegmentum | 4.51 ± 0.65 | |
| Striatum | 3.94 ± 0.6 | |
| Subthalamus | 4.85 ± 0.94 | |
| Temporal Lobe | 4.93 ± 0.63 | |
| Thalamus | 4.54 ± 0.65 | |
| White Matter | 4.39 ± 0.49 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Centg3 | CB | Cerebellum | 81.62 | |
| 62.31 | | |||
| Centg3 | CTX | Cerebral cortex | 72.17 | |
| 51.39 | | |||
| Centg3 | HIP | Hippocampal region | 80.62 | |
| 82.65 | | |||
| Centg3 | HPF | Hippocampal formation | 83.29 | |
| 76.11 | | |||
| Centg3 | HY | Hypothalamus | 51.81 | |
| 29.07 | | |||
| Centg3 | LSX | Lateral septal complex | 53.57 | |
| 29.82 | | |||
| Centg3 | MB | Midbrain | 55.25 | |
| 35.14 | | |||
| Centg3 | MY | Medulla | 66.02 | |
| 55.7 | | |||
| Centg3 | OLF | Olfactory bulb | 78.69 | |
| 58.87 | | |||
| Centg3 | P | Pons | 58.1 | |
| 49.71 | | |||
| Centg3 | PAL | Pallidum | 44.68 | |
| 29.9 | | |||
| Centg3 | RHP | Retrohippocampal region | 79.98 | |
| 66.77 | | |||
| Centg3 | sAMY | Striatum-like amygdalar nuclei | 54.36 | |
| 29.31 | | |||
| Centg3 | STR | Striatum | 43.93 | |
| 22.11 | | |||
| Centg3 | STRd | Striatum dorsal region | 38.71 | |
| 18.85 | | |||
| Centg3 | STRv | Striatum ventral region | 50 | |
| 25.41 | | |||
| Centg3 | TH | Thalamus | 70.81 | |
| 50.72 | |