Annotation Detail for PARD3B
Basic Information Top
| Gene Symbol: | PARD3B ( ALS2CR19,MGC16131,PAR3B,PAR3L,PAR3LC,PAR3beta,Par3Lb ) |
|---|---|
| Gene Full Name: | par-3 partitioning defective 3 homolog B (C. elegans) |
| Band: | 2q33.3 |
| Quick Links | Entrez ID:117583; OMIM: NA; Uniprot ID:PAR3L_HUMAN; ENSEMBL ID: ENSG00000116117; HGNC ID: 14446 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.657382
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 17 / 564012 | 30 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 41 / 1939121 | 21 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 77 / 3360307 | 22 | |
| ovarian tumor | 5 / 76682 | 65 |  |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 3 / 1100989 | 2 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 4 / 89626 | 44 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 1 / 24145 | 41 | |
| liver | 3 / 207743 | 14 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P113367
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.23 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.49 ± 0.22 | |
| Basal Part of Pons | 4.19 ± 0.71 | |
| Cerebellar Cortex | 4.07 ± 0.42 | |
| Cerebellar Nuclei | 5.04 ± 0.56 | |
| Claustrum | 4.47 ± 0.72 | |
| Epithalamus | 6.4 ± 0.62 | |
| Frontal Lobe | 4.53 ± 0.69 | |
| Globus Pallidus | 6.24 ± 0.39 | |
| Hypothalamus | 4.87 ± 0.9 | |
| Insula | 4.25 ± 0.68 | |
| Limbic Lobe | 4.47 ± 0.79 | |
| Mesencephalon | 4.86 ± 0.61 | |
| Myelencephalon | 4.82 ± 0.73 | |
| Occipital Lobe | 4.83 ± 0.67 | |
| Parietal Lobe | 4.58 ± 0.7 | |
| Pontine Tegmentum | 4.68 ± 0.83 | |
| Striatum | 5.77 ± 0.47 | |
| Subthalamus | 3.9 ± 0.6 | |
| Temporal Lobe | 4.38 ± 0.68 | |
| Thalamus | 4.71 ± 0.56 | |
| White Matter | 6.38 ± 0.41 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Als2cr19 | CB | Cerebellum | 1.26 | |
| 1.93 | | |||
| Als2cr19 | CTX | Cerebral cortex | 2.39 | |
| 1.87 | | |||
| Als2cr19 | HIP | Hippocampal region | 1.65 | |
| 1.72 | | |||
| Als2cr19 | HPF | Hippocampal formation | 4.56 | |
| 4.53 | | |||
| Als2cr19 | HY | Hypothalamus | 2.43 | |
| 1.85 | | |||
| Als2cr19 | LSX | Lateral septal complex | 0.18 | |
| 0.19 | | |||
| Als2cr19 | MB | Midbrain | 0.5 | |
| 0.62 | | |||
| Als2cr19 | MY | Medulla | 0.35 | |
| 0.38 | | |||
| Als2cr19 | OLF | Olfactory bulb | 3.25 | |
| 2.9 | | |||
| Als2cr19 | P | Pons | 0.45 | |
| 0.55 | | |||
| Als2cr19 | PAL | Pallidum | 6.71 | |
| 5.73 | | |||
| Als2cr19 | RHP | Retrohippocampal region | 9.15 | |
| 8.16 | | |||
| Als2cr19 | sAMY | Striatum-like amygdalar nuclei | 9.06 | |
| 6.06 | | |||
| Als2cr19 | STR | Striatum | 3.77 | |
| 3.41 | | |||
| Als2cr19 | STRd | Striatum dorsal region | 4.45 | |
| 4.48 | | |||
| Als2cr19 | STRv | Striatum ventral region | 1.33 | |
| 1.02 | | |||
| Als2cr19 | TH | Thalamus | 6.88 | |
| 7.53 | |