Annotation Detail for C10orf71
Basic Information Top
| Gene Symbol: | C10orf71 ( FLJ45913 ) |
|---|---|
| Gene Full Name: | chromosome 10 open reading frame 71 |
| Band: | 10q11.23 |
| Quick Links | Entrez ID:118461; OMIM: NA; Uniprot ID:CJ071_HUMAN; ENSEMBL ID: ENSG00000177354; HGNC ID: 26973 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.585480
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 0 / 564012 | 0 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 13 / 1939121 | 6 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 11 / 3360307 | 3 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 0 / 1100989 | 0 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 1 / 89626 | 11 |  |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 15 / 107715 | 139 |  |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1121_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.05 ± 1.07 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.52 ± 0.31 | |
| Basal Part of Pons | 1.32 ± 0.37 | |
| Cerebellar Cortex | 1.39 ± 0.72 | |
| Cerebellar Nuclei | 1.77 ± 0.74 | |
| Claustrum | 2.57 ± 0.97 | |
| Epithalamus | 1.16 ± 0.75 | |
| Frontal Lobe | 1.39 ± 0.73 | |
| Globus Pallidus | 2.05 ± 0.35 | |
| Hypothalamus | 1.58 ± 0.68 | |
| Insula | 1.32 ± 0.62 | |
| Limbic Lobe | 1.62 ± 0.74 | |
| Mesencephalon | 1.74 ± 0.74 | |
| Myelencephalon | 1.62 ± 0.82 | |
| Occipital Lobe | 1.8 ± 0.72 | |
| Parietal Lobe | 1.56 ± 0.78 | |
| Pontine Tegmentum | 1.54 ± 0.72 | |
| Striatum | 1.75 ± 0.75 | |
| Subthalamus | 1.6 ± 0.62 | |
| Temporal Lobe | 1.47 ± 0.7 | |
| Thalamus | 1.49 ± 0.62 | |
| White Matter | 2.14 ± 0.58 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 3425401B19Rik | CB | Cerebellum | 32.97 | |
| 50.95 | | |||
| 3425401B19Rik | CTX | Cerebral cortex | 45.37 | |
| 35.35 | | |||
| 3425401B19Rik | HIP | Hippocampal region | 19.73 | |
| 22.48 | | |||
| 3425401B19Rik | HPF | Hippocampal formation | 24.26 | |
| 23.43 | | |||
| 3425401B19Rik | HY | Hypothalamus | 15.18 | |
| 12.72 | | |||
| 3425401B19Rik | LSX | Lateral septal complex | 6.34 | |
| 4.08 | | |||
| 3425401B19Rik | MB | Midbrain | 20.28 | |
| 20.76 | | |||
| 3425401B19Rik | MY | Medulla | 27.21 | |
| 30.61 | | |||
| 3425401B19Rik | OLF | Olfactory bulb | 39.98 | |
| 34.32 | | |||
| 3425401B19Rik | P | Pons | 16.78 | |
| 19.13 | | |||
| 3425401B19Rik | PAL | Pallidum | 14.12 | |
| 12.56 | | |||
| 3425401B19Rik | RHP | Retrohippocampal region | 31.7 | |
| 25.16 | | |||
| 3425401B19Rik | sAMY | Striatum-like amygdalar nuclei | 20.87 | |
| 14.67 | | |||
| 3425401B19Rik | STR | Striatum | 19.63 | |
| 14.3 | | |||
| 3425401B19Rik | STRd | Striatum dorsal region | 20.35 | |
| 15.17 | | |||
| 3425401B19Rik | STRv | Striatum ventral region | 23.33 | |
| 15.84 | | |||
| 3425401B19Rik | TH | Thalamus | 9.21 | |
| 7.1 | |