Annotation Detail for C10orf90
Basic Information Top
| Gene Symbol: | C10orf90 ( FLJ32938,bA422P15.2 ) |
|---|---|
| Gene Full Name: | chromosome 10 open reading frame 90 |
| Band: | 10q26.2 |
| Quick Links | Entrez ID:118611; OMIM: NA; Uniprot ID:CJ090_HUMAN; ENSEMBL ID: ENSG00000154493; HGNC ID: 26563 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.587663
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 4 / 564012 | 7 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 16 / 1939121 | 8 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 6 / 82823 | 72 |  |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 |  |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 40 / 3360307 | 11 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 12 / 124949 | 96 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 20 / 1100989 | 18 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 2 / 24145 | 82 | |
| liver | 0 / 207743 | 0 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 13 / 210574 | 61 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 12 / 330442 | 36 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_263_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.38 ± 0.77 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.17 ± 0.72 | |
| Basal Part of Pons | 4.52 ± 0.66 | |
| Cerebellar Cortex | 3.97 ± 0.51 | |
| Cerebellar Nuclei | 5.85 ± 0.57 | |
| Claustrum | 4.78 ± 0.62 | |
| Epithalamus | 4.02 ± 0.99 | |
| Frontal Lobe | 4.52 ± 0.93 | |
| Globus Pallidus | 6.6 ± 0.44 | |
| Hypothalamus | 4.06 ± 0.52 | |
| Insula | 3.92 ± 0.74 | |
| Limbic Lobe | 4.38 ± 0.96 | |
| Mesencephalon | 5.06 ± 0.81 | |
| Myelencephalon | 4.84 ± 0.81 | |
| Occipital Lobe | 4.97 ± 0.76 | |
| Parietal Lobe | 4.76 ± 0.82 | |
| Pontine Tegmentum | 4.94 ± 0.76 | |
| Striatum | 5.53 ± 0.63 | |
| Subthalamus | 5.06 ± 0.44 | |
| Temporal Lobe | 4.49 ± 0.72 | |
| Thalamus | 5.37 ± 0.48 | |
| White Matter | 7.76 ± 0.62 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4933400E14Rik | CB | Cerebellum | 9.36 | |
| 9.45 | | |||
| 4933400E14Rik | CTX | Cerebral cortex | 23.59 | |
| 18.34 | | |||
| 4933400E14Rik | HIP | Hippocampal region | 14.47 | |
| 14.75 | | |||
| 4933400E14Rik | HPF | Hippocampal formation | 13.35 | |
| 12.18 | | |||
| 4933400E14Rik | HY | Hypothalamus | 5.64 | |
| 4.12 | | |||
| 4933400E14Rik | LSX | Lateral septal complex | 1.86 | |
| 1.29 | | |||
| 4933400E14Rik | MB | Midbrain | 5.33 | |
| 5.11 | | |||
| 4933400E14Rik | MY | Medulla | 6.7 | |
| 7 | | |||
| 4933400E14Rik | OLF | Olfactory bulb | 26.33 | |
| 22.09 | | |||
| 4933400E14Rik | P | Pons | 6.25 | |
| 6.36 | | |||
| 4933400E14Rik | PAL | Pallidum | 11.56 | |
| 11.16 | | |||
| 4933400E14Rik | RHP | Retrohippocampal region | 11.4 | |
| 8.62 | | |||
| 4933400E14Rik | sAMY | Striatum-like amygdalar nuclei | 27.94 | |
| 20.69 | | |||
| 4933400E14Rik | STR | Striatum | 18.94 | |
| 14.4 | | |||
| 4933400E14Rik | STRd | Striatum dorsal region | 19.98 | |
| 15.42 | | |||
| 4933400E14Rik | STRv | Striatum ventral region | 18.9 | |
| 13.63 | | |||
| 4933400E14Rik | TH | Thalamus | 7.94 | |
| 7.16 | |