Annotation Detail for SPPL3
Basic Information Top
| Gene Symbol: | SPPL3 ( DKFZp586C1324,IMP2,MDHV1887,MGC126674,MGC126676,MGC90402,PRO4332,PSL4 ) |
|---|---|
| Gene Full Name: | - |
| Band: | 12q24.31 |
| Quick Links | Entrez ID:121665; OMIM: 608240; Uniprot ID:PSL4_HUMAN; ENSEMBL ID: ENSG00000157837; HGNC ID: 30424 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.507087
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 36 / 564012 | 63 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 5 / 55556 | 89 | |
| adult | 120 / 1939121 | 61 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 4 / 34366 | 116 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 14 / 263845 | 53 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 10 / 136302 | 73 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 7 / 103127 | 67 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 177 / 3360307 | 52 | |
| ovarian tumor | 6 / 76682 | 78 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 12 / 125680 | 95 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 1 / 124949 | 8 |  |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 4 / 29757 | 134 | |
| blood | 5 / 123478 | 40 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 48 / 1100989 | 43 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 16 / 211054 | 75 | |
| heart | 3 / 89626 | 33 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 21 / 336974 | 62 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 21 / 280825 | 74 | |
| prostate | 15 / 189345 | 79 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 11 / 210574 | 52 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 6 / 96619 | 62 | |
| testis | 19 / 330442 | 57 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P427622
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.35 ± 0.48 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.25 ± 0.24 | |
| Basal Part of Pons | 5.97 ± 0.27 | |
| Cerebellar Cortex | 6.18 ± 0.3 | |
| Cerebellar Nuclei | 5.98 ± 0.2 | |
| Claustrum | 5.94 ± 0.5 | |
| Epithalamus | 5.96 ± 0.27 | |
| Frontal Lobe | 6.24 ± 0.31 | |
| Globus Pallidus | 5.77 ± 0.32 | |
| Hypothalamus | 6.23 ± 0.2 | |
| Insula | 6.18 ± 0.24 | |
| Limbic Lobe | 6.22 ± 0.29 | |
| Mesencephalon | 6.24 ± 0.33 | |
| Myelencephalon | 6.2 ± 0.31 | |
| Occipital Lobe | 6.04 ± 0.32 | |
| Parietal Lobe | 6.14 ± 0.27 | |
| Pontine Tegmentum | 6.18 ± 0.36 | |
| Striatum | 5.92 ± 0.28 | |
| Subthalamus | 6.22 ± 0.13 | |
| Temporal Lobe | 6.29 ± 0.29 | |
| Thalamus | 6.21 ± 0.25 | |
| White Matter | 6.49 ± 0.15 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sppl3 | CB | Cerebellum | 36.01 | |
| 53.13 | | |||
| Sppl3 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Sppl3 | HIP | Hippocampal region | 92.41 | |
| 100 | | |||
| Sppl3 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Sppl3 | HY | Hypothalamus | 77.39 | |
| 70.46 | | |||
| Sppl3 | LSX | Lateral septal complex | 67.88 | |
| 60.02 | | |||
| Sppl3 | MB | Midbrain | 70.64 | |
| 73.02 | | |||
| Sppl3 | MY | Medulla | 46.95 | |
| 65.48 | | |||
| Sppl3 | OLF | Olfactory bulb | 88.17 | |
| 100 | | |||
| Sppl3 | P | Pons | 49.53 | |
| 64.53 | | |||
| Sppl3 | PAL | Pallidum | 84.11 | |
| 90.94 | | |||
| Sppl3 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Sppl3 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Sppl3 | STR | Striatum | 85.12 | |
| 73.32 | | |||
| Sppl3 | STRd | Striatum dorsal region | 82.22 | |
| 68.43 | | |||
| Sppl3 | STRv | Striatum ventral region | 85.69 | |
| 73.54 | | |||
| Sppl3 | TH | Thalamus | 76.8 | |
| 72.47 | |