Annotation Detail for PLD4
Basic Information Top
| Gene Symbol: | PLD4 ( C14orf175 ) |
|---|---|
| Gene Full Name: | phospholipase D family, member 4 |
| Band: | 14q32.33 |
| Quick Links | Entrez ID:122618; OMIM: NA; Uniprot ID:PLD4_HUMAN; ENSEMBL ID: ENSG00000166428; HGNC ID: 23792 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.407101
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 2 / 564012 | 3 |  |
| neonate | 1 / 31097 | 32 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 13 / 1939121 | 6 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 48 / 3360307 | 14 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 9 / 48801 | 184 |  |
| brain | 19 / 1100989 | 17 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 1 / 336974 | 2 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 8 / 53952 | 148 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 4 / 16999 | 235 |  |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P88228
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.91 ± 1.01 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.23 ± 0.28 | |
| Basal Part of Pons | 2.78 ± 0.91 | |
| Cerebellar Cortex | 2.26 ± 0.79 | |
| Cerebellar Nuclei | 3.09 ± 0.57 | |
| Claustrum | 3.27 ± 0.94 | |
| Epithalamus | 2.67 ± 0.82 | |
| Frontal Lobe | 2.36 ± 0.79 | |
| Globus Pallidus | 3.43 ± 0.68 | |
| Hypothalamus | 2.24 ± 0.96 | |
| Insula | 2.36 ± 0.47 | |
| Limbic Lobe | 2.63 ± 0.82 | |
| Mesencephalon | 2.46 ± 0.8 | |
| Myelencephalon | 2.52 ± 0.74 | |
| Occipital Lobe | 2.49 ± 0.99 | |
| Parietal Lobe | 2.48 ± 0.9 | |
| Pontine Tegmentum | 2.42 ± 0.8 | |
| Striatum | 2.87 ± 0.73 | |
| Subthalamus | 2.48 ± 0.81 | |
| Temporal Lobe | 2.42 ± 0.8 | |
| Thalamus | 2.38 ± 0.7 | |
| White Matter | 3.28 ± 0.46 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Pld4 | CB | Cerebellum | 3.29 | |
| 3.58 | | |||
| Pld4 | CTX | Cerebral cortex | 15.53 | |
| 6.7 | | |||
| Pld4 | HIP | Hippocampal region | 7.12 | |
| 4.19 | | |||
| Pld4 | HPF | Hippocampal formation | 8.23 | |
| 4.17 | | |||
| Pld4 | HY | Hypothalamus | 3.03 | |
| 1.07 | | |||
| Pld4 | LSX | Lateral septal complex | 3.29 | |
| 1.27 | | |||
| Pld4 | MB | Midbrain | 3.87 | |
| 1.88 | | |||
| Pld4 | MY | Medulla | 4.7 | |
| 2.27 | | |||
| Pld4 | OLF | Olfactory bulb | 14.36 | |
| 6.2 | | |||
| Pld4 | P | Pons | 5.09 | |
| 3.02 | | |||
| Pld4 | PAL | Pallidum | 7.38 | |
| 2.59 | | |||
| Pld4 | RHP | Retrohippocampal region | 10.11 | |
| 4.22 | | |||
| Pld4 | sAMY | Striatum-like amygdalar nuclei | 7.85 | |
| 3.72 | | |||
| Pld4 | STR | Striatum | 7.72 | |
| 3.35 | | |||
| Pld4 | STRd | Striatum dorsal region | 7.46 | |
| 3.25 | | |||
| Pld4 | STRv | Striatum ventral region | 9.92 | |
| 3.99 | | |||
| Pld4 | TH | Thalamus | 2.76 | |
| 1.37 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00010804 | 18 | 375 | 392 | LLVGCGLNTDPTMFPYLR | Peptide Atlas |