Annotation Detail for FRMD6
Basic Information Top
| Gene Symbol: | FRMD6 ( C14orf31,EX1,MGC17921,Willin,c14_5320 ) |
|---|---|
| Gene Full Name: | FERM domain containing 6 |
| Band: | 14q22.1 |
| Quick Links | Entrez ID:122786; OMIM: NA; Uniprot ID:FRMD6_HUMAN; ENSEMBL ID: ENSG00000139926; HGNC ID: 19839 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.434914
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 17 / 70761 | 240 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 26 / 564012 | 46 | |
| neonate | 2 / 31097 | 64 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 90 / 1939121 | 46 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 5 / 17475 | 286 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 18 / 82823 | 217 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 3 / 17290 | 173 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 24 / 136302 | 176 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 11 / 96359 | 114 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 195 / 3360307 | 58 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 16 / 124949 | 128 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 6 / 29757 | 201 | |
| blood | 0 / 123478 | 0 | |
| bone | 9 / 71655 | 125 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 21 / 1100989 | 19 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 18 / 149255 | 120 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 25 / 215722 | 115 | |
| esophagus | 3 / 20209 | 148 | |
| eye | 7 / 211054 | 33 | |
| heart | 5 / 89626 | 55 | |
| intestine | 1 / 234472 | 4 |  |
| kidney | 8 / 211777 | 37 | |
| larynx | 5 / 24145 | 207 | |
| liver | 15 / 207743 | 72 | |
| lung | 11 / 336974 | 32 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 10 / 153271 | 65 | |
| mouth | 18 / 67052 | 268 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 13 / 189345 | 68 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 34 / 210574 | 161 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 42 / 330442 | 127 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 11 / 52413 | 209 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 30 / 232878 | 128 | |
| vascular | 13 / 51780 | 251 | |
Microarray in - Probe name: A_23_P25888
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.66 ± 0.52 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.44 ± 0.37 | |
| Basal Part of Pons | 4.02 ± 0.46 | |
| Cerebellar Cortex | 5.22 ± 0.29 | |
| Cerebellar Nuclei | 4.71 ± 0.46 | |
| Claustrum | 4.46 ± 0.81 | |
| Epithalamus | 5.54 ± 0.48 | |
| Frontal Lobe | 4.48 ± 0.52 | |
| Globus Pallidus | 4.69 ± 0.74 | |
| Hypothalamus | 4.85 ± 0.97 | |
| Insula | 4.83 ± 0.79 | |
| Limbic Lobe | 4.54 ± 0.59 | |
| Mesencephalon | 4.56 ± 0.57 | |
| Myelencephalon | 4.67 ± 0.58 | |
| Occipital Lobe | 4.95 ± 0.48 | |
| Parietal Lobe | 4.69 ± 0.59 | |
| Pontine Tegmentum | 4.85 ± 0.54 | |
| Striatum | 4.24 ± 0.52 | |
| Subthalamus | 4.98 ± 0.81 | |
| Temporal Lobe | 4.66 ± 0.54 | |
| Thalamus | 4.72 ± 0.48 | |
| White Matter | 3.45 ± 0.75 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Frmd6 | CB | Cerebellum | 1.48 | |
| 2.5 | | |||
| Frmd6 | CTX | Cerebral cortex | 12.05 | |
| 8.63 | | |||
| Frmd6 | HIP | Hippocampal region | 2.68 | |
| 2.64 | | |||
| Frmd6 | HPF | Hippocampal formation | 1.99 | |
| 1.85 | | |||
| Frmd6 | HY | Hypothalamus | 0.13 | |
| 0.22 | | |||
| Frmd6 | LSX | Lateral septal complex | 0.59 | |
| 0.51 | | |||
| Frmd6 | MB | Midbrain | 0.29 | |
| 0.41 | | |||
| Frmd6 | MY | Medulla | 1.83 | |
| 3.58 | | |||
| Frmd6 | OLF | Olfactory bulb | 7.54 | |
| 5.94 | | |||
| Frmd6 | P | Pons | 0.36 | |
| 0.75 | | |||
| Frmd6 | PAL | Pallidum | 0.08 | |
| 0.12 | | |||
| Frmd6 | RHP | Retrohippocampal region | 0.99 | |
| 0.89 | | |||
| Frmd6 | sAMY | Striatum-like amygdalar nuclei | 0.57 | |
| 0.51 | | |||
| Frmd6 | STR | Striatum | 0.88 | |
| 0.7 | | |||
| Frmd6 | STRd | Striatum dorsal region | 0.46 | |
| 0.38 | | |||
| Frmd6 | STRv | Striatum ventral region | 2.44 | |
| 1.76 | | |||
| Frmd6 | TH | Thalamus | 0.29 | |
| 0.38 | |