AutismKB 2.0

Annotation Detail for CCR1


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Basic Information Top
Gene Symbol:CCR1 ( CD191,CKR-1,CKR1,CMKBR1,HM145,MIP1aR,SCYAR1 )
Gene Full Name: chemokine (C-C motif) receptor 1
Band: 3p21.31
Quick LinksEntrez ID:1230; OMIM: 601159; Uniprot ID:CCR1_HUMAN; ENSEMBL ID: ENSG00000163823; HGNC ID: 1602
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate2 / 3109764
infant0 / 236200 
juvenile1 / 5555617
adult34 / 193912117
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor0 / 2638450 
glioma11 / 106883102
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal49 / 336030714
ovarian tumor0 / 766820 
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood8 / 12347864
bone0 / 716550 
bone marrow2 / 4880140
brain12 / 110098910
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine3 / 23447212
kidney9 / 21177742
larynx0 / 241450 
liver0 / 2077430 
lung17 / 33697450
lymph0 / 442700 
lymph node1 / 9161010
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas10 / 21481246
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta13 / 28082546
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach1 / 9661910
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus6 / 23287825
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205099_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.85
Adipocyte6.65
AdrenalCortex7.8
Adrenalgland6.1
Amygdala6.8
Appendix6.9
AtrioventricularNode6.6
BDCA4+_DentriticCells51.15
Bonemarrow7.5
BronchialEpithelialCells6.6
CD105+_Endothelial20.85
CD14+_Monocytes437.55
CD19+_BCells(neg._sel.)6.95
CD33+_Myeloid478.75
CD34+10.25
CD4+_Tcells6.85
CD56+_NKCells13.1
CD71+_EarlyErythroid6.35
CD8+_Tcells6.2
CardiacMyocytes9
Caudatenucleus6.1
Cerebellum5.4
CerebellumPeduncles8.25
CiliaryGanglion5.75
CingulateCortex7.25
Colorectaladenocarcinoma6.7
DorsalRootGanglion8.55
FetalThyroid6.7
Fetalbrain6.8
Fetalliver5.9
Fetallung5.55
GlobusPallidus5.75
Heart10.1
Hypothalamus7.45
Kidney6.45
Leukemia_chronicMyelogenousK-5626.15
Leukemia_promyelocytic-HL-605.95
Leukemialymphoblastic(MOLT-4)5.45
Liver10.75
Lung7.5
Lymphnode7.1
Lymphoma_burkitts(Daudi)9.05
Lymphoma_burkitts(Raji)9.7
MedullaOblongata6.1
OccipitalLobe6.65
OlfactoryBulb7.85
Ovary5.25
Pancreas5.7
PancreaticIslet7.2
ParietalLobe7.65
Pituitary8.2
Placenta7.65
Pons9.05
PrefrontalCortex7.9
Prostate7.05
Salivarygland5.75
SkeletalMuscle11.05
Skin6.55
SmoothMuscle7.45
Spinalcord7.35
SubthalamicNucleus7.65
SuperiorCervicalGanglion10.2
TemporalLobe8.2
Testis5.8
TestisGermCell5.3
TestisIntersitial5.7
TestisLeydigCell8
TestisSeminiferousTubule6.3
Thalamus7.2
Thymus5.8
Thyroid7.6
Tongue7.95
Tonsil7.2
Trachea5.45
TrigeminalGanglion8.65
Uterus4.95
UterusCorpus6.65
WholeBlood162.75
Wholebrain5.3
colon6.65
pineal_day8.12
pineal_night8
retina8.475
small_intestine7.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P6849
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.31 ± 1.01
Basal Forebrain1.87 ± 0.2
Basal Part of Pons1.53 ± 0.36
Cerebellar Cortex1.68 ± 0.64
Cerebellar Nuclei2.25 ± 0.66
Claustrum2.6 ± 0.73
Epithalamus1.93 ± 0.88
Frontal Lobe1.73 ± 0.63
Globus Pallidus2.79 ± 0.74
Hypothalamus1.97 ± 0.68
Insula2.16 ± 0.66
Limbic Lobe1.85 ± 0.63
Mesencephalon2.05 ± 0.68
Myelencephalon1.96 ± 0.67
Occipital Lobe1.84 ± 0.5
Parietal Lobe1.98 ± 0.79
Pontine Tegmentum2.04 ± 0.69
Striatum2.32 ± 0.78
Subthalamus2.08 ± 0.7
Temporal Lobe1.85 ± 0.65
Thalamus1.94 ± 0.58
White Matter2.16 ± 0.16
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ccr1CBCerebellum60.31
95.73
Ccr1CTXCerebral cortex99.63
91.83
Ccr1HIPHippocampal region86.65
100
Ccr1HPFHippocampal formation92.04
100
Ccr1HYHypothalamus61.11
53.51
Ccr1LSXLateral septal complex72.33
68.53
Ccr1MBMidbrain72.18
74.3
Ccr1MYMedulla88.35
91.82
Ccr1OLFOlfactory bulb90.78
83.51
Ccr1PPons81.69
83.74
Ccr1PALPallidum74.55
77.49
Ccr1RHPRetrohippocampal region100
95.42
Ccr1sAMYStriatum-like amygdalar nuclei79.7
65.53
Ccr1STRStriatum79.91
68.08
Ccr1STRdStriatum dorsal region78.15
66.5
Ccr1STRvStriatum ventral region84.05
68.85
Ccr1THThalamus73.83
73.26
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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