AutismKB 2.0

Annotation Detail for CCR1


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Basic Information Top
Gene Symbol:CCR1 ( CD191,CKR-1,CKR1,CMKBR1,HM145,MIP1aR,SCYAR1 )
Gene Full Name: chemokine (C-C motif) receptor 1
Band: 3p21.31
Quick LinksEntrez ID:1230; OMIM: 601159; Uniprot ID:CCR1_HUMAN; ENSEMBL ID: ENSG00000163823; HGNC ID: 1602
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate2 / 3109764
infant0 / 236200 
juvenile1 / 5555617
adult34 / 193912117
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205099_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.85
Adipocyte6.65
AdrenalCortex7.8
Adrenalgland6.1
Amygdala6.8
Appendix6.9
AtrioventricularNode6.6
BDCA4+_DentriticCells51.15
Bonemarrow7.5
BronchialEpithelialCells6.6
CD105+_Endothelial20.85
CD14+_Monocytes437.55
CD19+_BCells(neg._sel.)6.95
CD33+_Myeloid478.75
CD34+10.25
CD4+_Tcells6.85
CD56+_NKCells13.1
CD71+_EarlyErythroid6.35
CD8+_Tcells6.2
CardiacMyocytes9
Caudatenucleus6.1
Cerebellum5.4
CerebellumPeduncles8.25
CiliaryGanglion5.75
CingulateCortex7.25
Colorectaladenocarcinoma6.7
DorsalRootGanglion8.55
FetalThyroid6.7
Fetalbrain6.8
Fetalliver5.9
Fetallung5.55
GlobusPallidus5.75
Heart10.1
Hypothalamus7.45
Kidney6.45
Leukemia_chronicMyelogenousK-5626.15
Leukemia_promyelocytic-HL-605.95
Leukemialymphoblastic(MOLT-4)5.45
Liver10.75
Lung7.5
Lymphnode7.1
Lymphoma_burkitts(Daudi)9.05
Lymphoma_burkitts(Raji)9.7
MedullaOblongata6.1
OccipitalLobe6.65
OlfactoryBulb7.85
Ovary5.25
Pancreas5.7
PancreaticIslet7.2
ParietalLobe7.65
Pituitary8.2
Placenta7.65
Pons9.05
PrefrontalCortex7.9
Prostate7.05
Salivarygland5.75
SkeletalMuscle11.05
Skin6.55
SmoothMuscle7.45
Spinalcord7.35
SubthalamicNucleus7.65
SuperiorCervicalGanglion10.2
TemporalLobe8.2
Testis5.8
TestisGermCell5.3
TestisIntersitial5.7
TestisLeydigCell8
TestisSeminiferousTubule6.3
Thalamus7.2
Thymus5.8
Thyroid7.6
Tongue7.95
Tonsil7.2
Trachea5.45
TrigeminalGanglion8.65
Uterus4.95
UterusCorpus6.65
WholeBlood162.75
Wholebrain5.3
colon6.65
pineal_day8.12
pineal_night8
retina8.475
small_intestine7.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P6849
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.31 ± 1.01
Basal Forebrain1.87 ± 0.2
Basal Part of Pons1.53 ± 0.36
Cerebellar Cortex1.68 ± 0.64
Cerebellar Nuclei2.25 ± 0.66
Claustrum2.6 ± 0.73
Epithalamus1.93 ± 0.88
Frontal Lobe1.73 ± 0.63
Globus Pallidus2.79 ± 0.74
Hypothalamus1.97 ± 0.68
Insula2.16 ± 0.66
Limbic Lobe1.85 ± 0.63
Mesencephalon2.05 ± 0.68
Myelencephalon1.96 ± 0.67
Occipital Lobe1.84 ± 0.5
Parietal Lobe1.98 ± 0.79
Pontine Tegmentum2.04 ± 0.69
Striatum2.32 ± 0.78
Subthalamus2.08 ± 0.7
Temporal Lobe1.85 ± 0.65
Thalamus1.94 ± 0.58
White Matter2.16 ± 0.16
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ccr1CBCerebellum60.31
95.73
Ccr1CTXCerebral cortex99.63
91.83
Ccr1HIPHippocampal region86.65
100
Ccr1HPFHippocampal formation92.04
100
Ccr1HYHypothalamus61.11
53.51
Ccr1LSXLateral septal complex72.33
68.53
Ccr1MBMidbrain72.18
74.3
Ccr1MYMedulla88.35
91.82
Ccr1OLFOlfactory bulb90.78
83.51
Ccr1PPons81.69
83.74
Ccr1PALPallidum74.55
77.49
Ccr1RHPRetrohippocampal region100
95.42
Ccr1sAMYStriatum-like amygdalar nuclei79.7
65.53
Ccr1STRStriatum79.91
68.08
Ccr1STRdStriatum dorsal region78.15
66.5
Ccr1STRvStriatum ventral region84.05
68.85
Ccr1THThalamus73.83
73.26
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018