Annotation Detail for NIPA1
Basic Information Top
| Gene Symbol: | NIPA1 ( FSP3,MGC102724,MGC35570,SPG6 ) |
|---|---|
| Gene Full Name: | non imprinted in Prader-Willi/Angelman syndrome 1 |
| Band: | 15q11.2 |
| Quick Links | Entrez ID:123606; OMIM: 608145; Uniprot ID:NIPA1_HUMAN; ENSEMBL ID: ENSG00000170113; HGNC ID: 17043 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.511797
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 5 / 62319 | 80 |  |
| fetus | 20 / 564012 | 35 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 53 / 1939121 | 27 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 114 / 3360307 | 33 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 71 / 1100989 | 64 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 7 / 211054 | 33 | |
| heart | 2 / 89626 | 22 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 2 / 96619 | 20 | |
| testis | 8 / 330442 | 24 | |
| thymus | 5 / 81131 | 61 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: A_23_P359131
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.81 ± 0.5 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.47 ± 0.4 | |
| Basal Part of Pons | 7.42 ± 0.42 | |
| Cerebellar Cortex | 6.9 ± 0.32 | |
| Cerebellar Nuclei | 8.34 ± 0.33 | |
| Claustrum | 7.35 ± 0.35 | |
| Epithalamus | 6.69 ± 0.58 | |
| Frontal Lobe | 7.29 ± 0.51 | |
| Globus Pallidus | 8.44 ± 0.32 | |
| Hypothalamus | 7.21 ± 0.55 | |
| Insula | 6.96 ± 0.27 | |
| Limbic Lobe | 7.23 ± 0.54 | |
| Mesencephalon | 7.63 ± 0.5 | |
| Myelencephalon | 7.39 ± 0.51 | |
| Occipital Lobe | 7.78 ± 0.48 | |
| Parietal Lobe | 7.47 ± 0.49 | |
| Pontine Tegmentum | 7.47 ± 0.47 | |
| Striatum | 7.51 ± 0.48 | |
| Subthalamus | 7.9 ± 0.14 | |
| Temporal Lobe | 7.26 ± 0.44 | |
| Thalamus | 7.83 ± 0.41 | |
| White Matter | 8.98 ± 0.4 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nipa1 | CB | Cerebellum | 18.48 | |
| 22.46 | | |||
| Nipa1 | CTX | Cerebral cortex | 65.6 | |
| 55.26 | | |||
| Nipa1 | HIP | Hippocampal region | 35.95 | |
| 57.52 | | |||
| Nipa1 | HPF | Hippocampal formation | 42.67 | |
| 53.53 | | |||
| Nipa1 | HY | Hypothalamus | 17.85 | |
| 16.15 | | |||
| Nipa1 | LSX | Lateral septal complex | 10.02 | |
| 9.2 | | |||
| Nipa1 | MB | Midbrain | 37.54 | |
| 38.68 | | |||
| Nipa1 | MY | Medulla | 50.5 | |
| 64.1 | | |||
| Nipa1 | OLF | Olfactory bulb | 35.37 | |
| 31.36 | | |||
| Nipa1 | P | Pons | 39.71 | |
| 48.55 | | |||
| Nipa1 | PAL | Pallidum | 31.44 | |
| 34.49 | | |||
| Nipa1 | RHP | Retrohippocampal region | 55.52 | |
| 50.62 | | |||
| Nipa1 | sAMY | Striatum-like amygdalar nuclei | 20.04 | |
| 16.05 | | |||
| Nipa1 | STR | Striatum | 27.56 | |
| 22.1 | | |||
| Nipa1 | STRd | Striatum dorsal region | 32.24 | |
| 26.08 | | |||
| Nipa1 | STRv | Striatum ventral region | 26.83 | |
| 20.23 | | |||
| Nipa1 | TH | Thalamus | 41.81 | |
| 43.38 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00509090 | 18 | 208 | 225 | GIGLAAQDILHNNPSSQR | Peptide Atlas |