AutismKB 2.0

Annotation Detail for WHAMM


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Basic Information Top
Gene Symbol:WHAMM ( KIAA1971,WHDC1 )
Gene Full Name: WAS protein homolog associated with actin, golgi membranes and microtubules
Band: 15q25.2
Quick LinksEntrez ID:123720; OMIM: 612393; Uniprot ID:WHAMM_HUMAN; ENSEMBL ID: ENSG00000156232; HGNC ID: 30493
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus4 / 5640127
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult30 / 193912115
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor3 / 11936925
germ cell tumor0 / 2638450 
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal32 / 33603079
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder2 / 2975767
blood0 / 1234780 
bone3 / 7165541
bone marrow0 / 488010 
brain6 / 11009895
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye2 / 2110549
heart2 / 8962622
intestine7 / 23447229
kidney0 / 2117770 
larynx0 / 241450 
liver2 / 2077439
lung6 / 33697417
lymph0 / 442700 
lymph node1 / 9161010
mammary gland3 / 15327119
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary1 / 1020519
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta3 / 28082510
prostate2 / 18934510
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach3 / 9661931
testis2 / 3304426
thymus4 / 8113149
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: Primary tumors (U95A)
  • Affymatrix Probe ID: 34943_at
Cell line Expression level Expression bar
Pr1T5.353
Pr4T6.751
Pr5T6.025
Pr7T6.416
Pr1N6.61
Pr5N6.284
Pr6T7.775
Pr3N6.268
Pr3T6.8
Pr4N6.45
Pr2N5.934
Pr8N6.489
Pr8T7.125
Pr9N6.266
Pr10N6.566
Pr10T6.877
Pr9T6.097
Pr11T6.468
Pr12T6.342
Pr13AT6.757
Pr13BT6.531
Pr21T6.514
Pr22T6.654
Pr30T7.716
Pr23T7.516
Pr19T6.967
Pr26T7.213
Pr31T6.772
Pr16T7.071
Pr17T6.919
Pr24T6.566
Pr27T6.272
Pr29T7.288
OVR1026.532
HUOVR6.236
G27.754
G37.228
G56.726
G66.944
G86.567
G96.777
CO7T7.579
CO8T6.461
CO15T8.023
CO27T7.464
CO30T7.843
CO32T7.031
CO40T6.86
CO52N8.893
CO62N7.879
K16.398
K26.507
K35.753
K46.795
K14N8.433
K167.021
K178.346
K196.917
K206.932
K226.813
CO9T6.977
CO20T8.026
CO24T8.626
CO36N8.21
K186.642
P1N6.249
P2N7.365
P5N7.737
P86.788
P115.465
P177.095
K217.463
K25N7.95
K28N8.356
CO42T7.454
P225.891
P13N6.504
LU11T6.998
LU16T8.145
LU7T6.624
LU8T6.63
LU12T7.168
LU13T7.486
LU5T8.124
LU6T9.34
LU14T7.199
LU17T7.489
LU50N6.248
LU52N7.261
LU18T8.153
LU55N8.378
LU3N8.918
P16B8.608
P236.633
OVR166.349
OVR196.28
OVR276.552
OVR286.346
OVR278E7.167
OVR26.375
OVR56.373
OVR87.176
OVR116.967
OVR127.009
OVR136.466
OVR227.413
OVR267.377
OVR109.684
OVR278S7.904
OVR16.756
LU19T6.75
LU20T6.763
LU24T7.265
LU25T7.124
LU31T8.462
LU34T7.606
LU39T6.106
CO14T7.553
CO21T8.422
CO23T7.56
CO41N6.707
LU40T8.133
LU41T6.469
LU44T7.171
LU46T6.998
LU49T6.928
L5N7.585
LU42T7.097
LU30T7.533
LU43T8.688
CO5T7.494
CO44T6.524
CO49T7.246
CO51T7.495
CO56T6.844
CO61T6.834
LU26T7.628
LU33T8.327
LU36T6.793
CO43T7.736
G187.659
G466.764
L11T8.263
L13N7.993
L30T7.928
L31T8.055
L32T9.036
L34T8.36
L35T8.683
B1N8.319
B5N6.989
B8T7.26
B10T7.197
B14T8.102
B16T6.939
B17T7.275
B1NR8.549
B20T10.266
B51NR11.979
B6T9.372
B15T9.588
B21T10.977
B29T7.412
B31T8.357
B32T8.647
B24T6.996
B46T6.976
B34T7.53
B36T7.327
B37T7.809
B38T7.194
B39T6.484
X1027.105
X116_027.203
G2806.392
X466.401
X586.37
G1867.501
G2967.086
L38T7.135
L31T.26.806
L26N7.753
N257ANTR7.318
N285BODY6.734
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_3876_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.85 ± 0.57
Basal Forebrain6.32 ± 0.27
Basal Part of Pons6.06 ± 0.35
Cerebellar Cortex6.53 ± 0.22
Cerebellar Nuclei6.09 ± 0.42
Claustrum5.5 ± 0.68
Epithalamus6.12 ± 0.56
Frontal Lobe6.1 ± 0.37
Globus Pallidus6.33 ± 0.36
Hypothalamus5.98 ± 0.5
Insula6.15 ± 0.36
Limbic Lobe6.08 ± 0.4
Mesencephalon6.2 ± 0.4
Myelencephalon6.1 ± 0.41
Occipital Lobe6.25 ± 0.37
Parietal Lobe6.19 ± 0.4
Pontine Tegmentum6.07 ± 0.37
Striatum5.96 ± 0.36
Subthalamus5.75 ± 0.45
Temporal Lobe6.12 ± 0.37
Thalamus6.13 ± 0.37
White Matter6.53 ± 0.29
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Whdc1CBCerebellum27.49
34.51
Whdc1CTXCerebral cortex48
34.2
Whdc1HIPHippocampal region34.72
37.31
Whdc1HPFHippocampal formation40.04
36.06
Whdc1HYHypothalamus41.58
30.57
Whdc1LSXLateral septal complex56.37
41.41
Whdc1MBMidbrain41.76
35.5
Whdc1MYMedulla58.76
59.66
Whdc1OLFOlfactory bulb67.73
56.07
Whdc1PPons49.45
50.28
Whdc1PALPallidum37.56
32.83
Whdc1RHPRetrohippocampal region48.27
34.95
Whdc1sAMYStriatum-like amygdalar nuclei28.21
20.19
Whdc1STRStriatum17.21
12.72
Whdc1STRdStriatum dorsal region9.91
7.75
Whdc1STRvStriatum ventral region21.88
14.9
Whdc1THThalamus51.1
41.73
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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