Annotation Detail for CMTM3
Basic Information Top
| Gene Symbol: | CMTM3 ( BNAS2,CKLFSF3,FLJ31762,MGC51956 ) |
|---|---|
| Gene Full Name: | CKLF-like MARVEL transmembrane domain containing 3 |
| Band: | 16q22.1 |
| Quick Links | Entrez ID:123920; OMIM: 607886; Uniprot ID:CKLF3_HUMAN; ENSEMBL ID: ENSG00000140931; HGNC ID: 19174 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.298198
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 33 / 564012 | 58 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 6 / 55556 | 107 | |
| adult | 165 / 1939121 | 85 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 10 / 82823 | 120 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 32 / 263845 | 121 | |
| glioma | 13 / 106883 | 121 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 6 / 68959 | 87 | |
| leukemia | 18 / 95842 | 187 | |
| liver tumor | 8 / 96359 | 83 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 253 / 3360307 | 75 | |
| ovarian tumor | 10 / 76682 | 130 | |
| pancreatic tumor | 12 / 104616 | 114 | |
| primitive neuroectodermal tumor of the CNS | 19 / 125680 | 151 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 8 / 125191 | 63 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 24 / 123478 | 194 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 6 / 48801 | 122 | |
| brain | 42 / 1100989 | 38 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 18 / 215722 | 83 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 9 / 89626 | 100 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 13 / 211777 | 61 | |
| larynx | 1 / 24145 | 41 | |
| liver | 8 / 207743 | 38 | |
| lung | 22 / 336974 | 65 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 16 / 102051 | 156 | |
| pancreas | 16 / 214812 | 74 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 52 / 280825 | 185 | |
| prostate | 18 / 189345 | 95 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 11 / 210574 | 52 | |
| spleen | 6 / 53952 | 111 | |
| stomach | 6 / 96619 | 62 | |
| testis | 15 / 330442 | 45 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 21 / 232878 | 90 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P88865
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.69 ± 0.34 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8 ± 0.24 | |
| Basal Part of Pons | 7.76 ± 0.3 | |
| Cerebellar Cortex | 7.6 ± 0.21 | |
| Cerebellar Nuclei | 8.72 ± 0.3 | |
| Claustrum | 7.61 ± 0.36 | |
| Epithalamus | 9.03 ± 0.78 | |
| Frontal Lobe | 7.96 ± 0.48 | |
| Globus Pallidus | 9.42 ± 0.56 | |
| Hypothalamus | 7.99 ± 0.98 | |
| Insula | 8.06 ± 0.25 | |
| Limbic Lobe | 8.07 ± 0.68 | |
| Mesencephalon | 8.16 ± 0.45 | |
| Myelencephalon | 8.21 ± 0.54 | |
| Occipital Lobe | 7.91 ± 0.61 | |
| Parietal Lobe | 7.75 ± 0.46 | |
| Pontine Tegmentum | 7.93 ± 0.55 | |
| Striatum | 8.67 ± 0.45 | |
| Subthalamus | 8.26 ± 0.4 | |
| Temporal Lobe | 7.92 ± 0.43 | |
| Thalamus | 8.24 ± 0.47 | |
| White Matter | 8.89 ± 0.47 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cmtm3 | CB | Cerebellum | 68.76 | |
| 47.68 | | |||
| Cmtm3 | CTX | Cerebral cortex | 52.04 | |
| 33.97 | | |||
| Cmtm3 | HIP | Hippocampal region | 48.95 | |
| 29.32 | | |||
| Cmtm3 | HPF | Hippocampal formation | 50.42 | |
| 30.52 | | |||
| Cmtm3 | HY | Hypothalamus | 48.43 | |
| 27.4 | | |||
| Cmtm3 | LSX | Lateral septal complex | 12.8 | |
| 10.17 | | |||
| Cmtm3 | MB | Midbrain | 24.66 | |
| 17.58 | | |||
| Cmtm3 | MY | Medulla | 85.04 | |
| 59.09 | | |||
| Cmtm3 | OLF | Olfactory bulb | 75.72 | |
| 44.35 | | |||
| Cmtm3 | P | Pons | 78.54 | |
| 58.53 | | |||
| Cmtm3 | PAL | Pallidum | 24.45 | |
| 15.7 | | |||
| Cmtm3 | RHP | Retrohippocampal region | 52.65 | |
| 31.96 | | |||
| Cmtm3 | sAMY | Striatum-like amygdalar nuclei | 37.52 | |
| 21.68 | | |||
| Cmtm3 | STR | Striatum | 33.81 | |
| 18.36 | | |||
| Cmtm3 | STRd | Striatum dorsal region | 32.32 | |
| 17.07 | | |||
| Cmtm3 | STRv | Striatum ventral region | 50 | |
| 25.85 | | |||
| Cmtm3 | TH | Thalamus | 24.09 | |
| 14.03 | |