Annotation Detail for ZC3H18
Basic Information Top
| Gene Symbol: | ZC3H18 ( FLJ22664,FLJ34530,FLJ36075,NHN1 ) |
|---|---|
| Gene Full Name: | zinc finger CCCH-type containing 18 |
| Band: | 16q24.2 |
| Quick Links | Entrez ID:124245; OMIM: NA; Uniprot ID:ZCH18_HUMAN; ENSEMBL ID: ENSG00000158545; HGNC ID: 25091 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.93670
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 7 / 62319 | 112 | |
| fetus | 24 / 564012 | 42 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 75 / 1939121 | 38 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 20 / 263845 | 75 | |
| glioma | 11 / 106883 | 102 | |
| head and neck tumor | 10 / 136302 | 73 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 144 / 3360307 | 42 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 2 / 29757 | 67 | |
| blood | 3 / 123478 | 24 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 72 / 1100989 | 65 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 18 / 215722 | 83 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 1 / 89626 | 11 | |
| intestine | 16 / 234472 | 68 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 17 / 336974 | 50 | |
| lymph | 5 / 44270 | 112 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 9 / 67052 | 134 | |
| muscle | 1 / 107715 | 9 |  |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 11 / 280825 | 39 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 2 / 96619 | 20 | |
| testis | 24 / 330442 | 72 | |
| thymus | 9 / 81131 | 110 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 6 / 52413 | 114 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_1662_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.48 ± 0.52 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.24 ± 0.32 | |
| Basal Part of Pons | 5.19 ± 0.71 | |
| Cerebellar Cortex | 5.64 ± 0.32 | |
| Cerebellar Nuclei | 4.83 ± 0.67 | |
| Claustrum | 5.63 ± 0.64 | |
| Epithalamus | 5.16 ± 0.37 | |
| Frontal Lobe | 5.06 ± 0.53 | |
| Globus Pallidus | 5.59 ± 0.57 | |
| Hypothalamus | 4.9 ± 0.44 | |
| Insula | 5.02 ± 0.35 | |
| Limbic Lobe | 5.29 ± 0.59 | |
| Mesencephalon | 5.47 ± 0.47 | |
| Myelencephalon | 5.23 ± 0.59 | |
| Occipital Lobe | 5.55 ± 0.5 | |
| Parietal Lobe | 5.33 ± 0.52 | |
| Pontine Tegmentum | 5.21 ± 0.5 | |
| Striatum | 5.47 ± 0.66 | |
| Subthalamus | 4.84 ± 0.4 | |
| Temporal Lobe | 5.17 ± 0.51 | |
| Thalamus | 5.24 ± 0.56 | |
| White Matter | 6.1 ± 0.38 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 5830416A07Rik | CB | Cerebellum | 30 | |
| 69.97 | | |||
| 5830416A07Rik | CTX | Cerebral cortex | 82.06 | |
| 84.74 | | |||
| 5830416A07Rik | HIP | Hippocampal region | 44.65 | |
| 70.37 | | |||
| 5830416A07Rik | HPF | Hippocampal formation | 51.54 | |
| 75.79 | | |||
| 5830416A07Rik | HY | Hypothalamus | 8.38 | |
| 9.19 | | |||
| 5830416A07Rik | LSX | Lateral septal complex | 2.9 | |
| 2.16 | | |||
| 5830416A07Rik | MB | Midbrain | 13.87 | |
| 18.07 | | |||
| 5830416A07Rik | MY | Medulla | 9.02 | |
| 14.94 | | |||
| 5830416A07Rik | OLF | Olfactory bulb | 67.97 | |
| 86.5 | | |||
| 5830416A07Rik | P | Pons | 13.89 | |
| 21.96 | | |||
| 5830416A07Rik | PAL | Pallidum | 32.62 | |
| 44.91 | | |||
| 5830416A07Rik | RHP | Retrohippocampal region | 65.7 | |
| 87.06 | | |||
| 5830416A07Rik | sAMY | Striatum-like amygdalar nuclei | 33.56 | |
| 48.32 | | |||
| 5830416A07Rik | STR | Striatum | 56.68 | |
| 58.5 | | |||
| 5830416A07Rik | STRd | Striatum dorsal region | 66.13 | |
| 64.06 | | |||
| 5830416A07Rik | STRv | Striatum ventral region | 62.47 | |
| 69.58 | | |||
| 5830416A07Rik | TH | Thalamus | 36.65 | |
| 41.59 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00037906 | 25 | 790 | 814 | SSQQPSTPQQAPPGQPQQGTFVAHK | Peptide Atlas |